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GalaxyProject.org Prior Tool and UI Q&A

Scientific usage guidelines, Application how-to advice, and Error/Bug Troubleshooting based on prior user questions in a summarized format.

For graphical help when using the Galaxy Application, please see:

For a list of currently ticketed tool/application issues, please see: Support Known Issues

Question sources: https://biostar.usegalaxy.org (acutal) and galaxy-bugs@lists.galaxyproject.org (abstracted)

Note: This wiki is a work-in-progress

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• First pass solutions for unexpected results/errors

• Sort your inputs

• FASTQ format, datatype, and content

• Custom Genomes/Builds

• RNA-seq

• HISAT2

• Tophat(2)

• Cufflinks

• Cuffmerge

• Cuffdiff

• Next