NAMESPACE

# Generated by roxygen2: do not edit by hand

export(exportCount)
export(filterCount)
export(importCount)
export(mergeCounts)
export(plotHeatmap)
export(plotProfile)
export(relabels)
import(BiocGenerics)
import(GenomicRanges)
import(IRanges)
importFrom(R.utils,gzip)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,"assays<-")
importFrom(SummarizedExperiment,"rowRanges<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,rowRanges)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_colour_gradient2)
importFrom(ggplot2,scale_fill_gradient)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(methods,is)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(rjson,fromJSON)
importFrom(rjson,toJSON)
importFrom(stats,as.formula)
importFrom(stats,loess.smooth)
importFrom(stats,relevel)
importFrom(utils,read.delim)
importFrom(utils,write.table)