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HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 139982594582336: #38

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shailzajolly opened this issue Jul 9, 2018 · 0 comments
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@shailzajolly
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shailzajolly commented Jul 9, 2018

Hi all,
I am getting this error after 25000 iterations.
Could anyone please suggest me how to solve it?

iter 25800: 1.169770, 1.267317, 0.000339, 27442.332723
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 139982594582336:
#000: H5Tnative.c line 122 in H5Tget_native_type(): unable to register data type
major: Datatype
minor: Unable to register new atom
#1: H5I.c line 895 in H5I_register(): can't insert ID node into skip list
major: Object atom
minor: Unable to insert object
#2: H5SL.c line 995 in H5SL_insert(): can't create new skip list node
major: Skip Lists
minor: Unable to insert object
#3: H5SL.c line 687 in H5SL_insert_common(): can't insert duplicate key
major: Skip Lists
minor: Unable to insert object
HDF5-DIAG: Error detected in HDF5 (1.8.13) thread 139982594582336:
#000: H5Dio.c line 173 in H5Dread(): can't read data
major: Dataset
minor: Read failed
#1: H5Dio.c line 420 in H5D__read(): unable to set up type info
major: Dataset
minor: Unable to initialize object
#2: H5Dio.c line 927 in H5D__typeinfo_init(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
/home/ubuntu/torch/install/bin/luajit: /home/ubuntu/torch/install/share/lua/5.1/hdf5/dataset.lua:160: HDF5DataSet:partial() - failed reading data from [HDF5DataSet (83886080 /images_train DATASET)]
stack traceback:
[C]: in function 'assert'
/home/ubuntu/torch/install/share/lua/5.1/hdf5/dataset.lua:160: in function 'partial'
./misc/DataLoaderDisk.lua:123: in function 'getBatch'
/home/ubuntu/torch/install/share/lua/5.1/hdf5/dataset.lua:160: in function 'partial'
./misc/DataLoaderDisk.lua:123: in function 'getBatch'
train.lua:245: in function 'lossFun'
train.lua:310: in main chunk
[C]: in function 'dofile'
...untu/torch/install/lib/luarocks/rocks/trepl/scm-1/bin/th:150: in main chunk
[C]: at 0x00405d50

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