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index.html
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index.html
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<html>
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1">
<link rel="icon" href="./images/favicon.ico" type="image/x-icon" />
<script src="./js/jquery-3.2.1.js"></script>
<script src="./js/bootstrap.min.js"></script>
<script src="./js/injectresults.js"></script>
<script src="./js/tothetop.js"></script>
<script src="./js/filetransfer.js"></script>
<link rel="stylesheet" type="text/css" href="./css/bootstrap.min.css">
<link rel="stylesheet" type="text/css" href="./css/fine-uploader-gallery.min.css">
<link rel="stylesheet" type="text/css" href="./css/style.css" />
<title>Taxonomy assignment queue</title>
</head>
<body>
<br><br>
<div class="container">
<!-- Drop files here container -->
<div class="row">
<div id="upload-area"></div>
</div>
<script src="./simple-thumbnails.html" type="text/template" id="qq-template"></script>
<script src="./js/load-template.js"></script>
<script src="./js/fine-uploader.min.js"></script>
<script src="./js/fine-uploader.user.js"></script>
<br>
<!-- Fwd, Bwd primer seq selection -->
<div class="row">
<form id="optionForm" name="optionForm" role="form">
<div class="form-group">
<label for="select">Task name</label>
<input name="taskname" type="text" class="form-control" id="taskname">
</div>
<div class="form-group">
<label for="select">Primer sequence</label>
<select name="primerseq" class="form-control">
<option selected="selected" value="Bacteria">Bacteria</option>
<option value="Archaea">Archaea</option>
<option value="Prokaryotes">Prokaryotes</option>
</select>
</div>
<div class="form-group">
<label for="match-option">Match option</label>
<div class="checkbox-group">
<div class="checkbox">
<label>
<input type="checkbox" id="checkFwd" name="checkFwd" value="fwdp">
Forward Primer
</label>
</div>
<div class="checkbox">
<label>
<input type="checkbox" id="checkRev" name="checkRev" value="revp">
Reverse Primer
</label>
</div>
<div class="checkbox">
<label>
<input type="checkbox" id="checkFull" name="checkFull" value="fl">
Full length
</label>
</div>
</div>
</div>
<div class="form-group">
<label for="select">Taxonomy assign algorithm</label>
<select name="taxalg" class="form-control">
<option selected="selected" value="RDP">RDP</option>
<option value="BLAST">BLAST</option>
<option value="UCLUST">UCLUST</option>
</select>
</div>
<div class="form-group">
<label for="select">RDP Database</label>
<select name="rdpdb" class="form-control">
<option selected="selected" value="greengenes">greengenes</option>
<option value="silva">silva</option>
<option value="unite">unite</option>
</select>
</div>
<div class="form-group">
<label for="select">Confidency level</label>
<select name="conflevel" class="form-control">
<option value="0.9">0.9</option>
<option value="0.8">0.8</option>
<option value="0.7">0.7</option>
<option value="0.6">0.6</option>
<option value="0.5">0.5</option>
<option value="0.4">0.4</option>
<option value="0.3">0.3</option>
<option selected="selected" value="0.2">0.2</option>
<option value="0.1">0.1</option>
</select>
</div>
<div class="form-group">
<label for="select">Truncate length</label>
<select name="trlen" class="form-control">
<option selected="selected" value="nt">Not truncate</option>
<option value="200">200bp</option>
<option value="250">250bp</option>
</select>
</div>
</form>
</div>
<!-- Upload button -->
<div class="row">
<div id="uploaded-holder">
<div id="dropped-files">
<div id="upload-button">
<a href="#" class="upload"><i class="ss-upload"> </i> Upload!</a>
<a href="#" class="delete"><i class="ss-delete"> </i></a>
<span>0 Files</span>
</div>
</div>
<div id="extra-files">
<div class="number">
0
</div>
<div id="file-list">
<ul></ul>
</div>
</div>
</div>
</div>
<div class="row">
<div id="loading">
<div id="loading-bar">
<div class="loading-color"> </div>
</div>
<div id="loading-content">Uploading file.jpg</div>
</div>
</div>
<div class="row">
<div id="result-link">
<span></span>
</div>
</div>
<!-- results -->
<div class="row">
<div id="result-window"></div>
</div>
</div>
<!-- to the TOP button -->
<button onclick="topFunction()" id="myBtn" type="button" class="btn btn-info">Top</button>
</body>
</html>