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[ENH]: UKB gray matter template #334

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kaurao opened this issue Apr 19, 2024 · 3 comments · Fixed by #350
Closed
1 task done

[ENH]: UKB gray matter template #334

kaurao opened this issue Apr 19, 2024 · 3 comments · Fixed by #350
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enhancement New feature or request mask Issues or pull requests related to masks

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@kaurao
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kaurao commented Apr 19, 2024

Are you requiring a new dataset or marker?

  • I understand this is not a marker or dataset request

Which feature do you want to include?

Add support for UKB gray matter template. It is available for download: https://open.win.ox.ac.uk/pages/douaud/ukb-lifo-flica/
Direct link: https://www.fmrib.ox.ac.uk/datasets/UKB_LIFO_FLICA/UKB_15K_GM_template.nii.gz

How do you imagine this integrated in junifer?

This template should be available as an option perhaps with name UKB_15K_GM.

Do you have a sample code that implements this outside of junifer?

No response

Anything else to say?

No response

@kaurao kaurao added enhancement New feature or request triage New issues waiting to be reviewed labels Apr 19, 2024
@synchon
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synchon commented Jul 1, 2024

@kaurao Is it ok if we have it as a mask with junifer, as it's just for the GM?

@kaurao
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kaurao commented Jul 1, 2024

This can be used as a "general" GM mask and not only when extracting markers from GM. Thanks!

@synchon
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synchon commented Jul 1, 2024

This can be used as a "general" GM mask and not only when extracting markers from GM. Thanks!

Sounds good!

@synchon synchon added mask Issues or pull requests related to masks and removed triage New issues waiting to be reviewed labels Jul 3, 2024
@synchon synchon linked a pull request Jul 3, 2024 that will close this issue
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@synchon synchon mentioned this issue Jul 3, 2024
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