don't run the codes

[db-beep]

Preprocess input files
python -W ignore PreprocessingscGNN.py --datasetName GSE138852_counts.csv.gz --datasetDir GSE138852/ --LTMGDir GSE138852/ --filetype CSV --geneSelectnum 2000 --inferLTMGTag
error information：
R[write to console]: 在启动过程中 -
R[write to console]: Warning messages:
R[write to console]: 1: package "methods" in options("defaultPackages") was not found

R[write to console]: 2: package ‘datasets’ in options("defaultPackages") was not found

R[write to console]: 3: package ‘utils’ in options("defaultPackages") was not found

R[write to console]: 4: package ‘grDevices’ in options("defaultPackages") was not found

R[write to console]: 5: package ‘graphics’ in options("defaultPackages") was not found

R[write to console]: 6: package ‘stats’ in options("defaultPackages") was not found

R[write to console]: 7: package ‘methods’ in options("defaultPackages") was not found

R[write to console]: 错误: loadNamespace()里算'methods'时.onLoad失败了，详细内容：
调用: assign(".methodsNamespace", where, baseenv())
错误: 无法在基本环境里加联编'.methodsNamespace'
R[write to console]: Fatal error: unable to initialize the JIT

[juexinwang]

Please stick on versions of the R/Python combination I listed in the github. Inferring LTMG needs rpy2, which is not that mature as other python packages. Thanks

[victorwang123]

Please stick on versions of the R/Python combination I listed in the github. Inferring LTMG needs rpy2, which is not that mature as other python packages. Thanks

Can you tell us what is the version of your rpy2 ?