copied code from scope2screen for updating ome_types and json conversion of image metadata

Author: nchuynh

minerva_analysis/server/routes/data_routes.py

@@ -180,8 +180,13 @@ def get_rect_cells():
 @app.route('/get_ome_metadata', methods=['GET'])
 def get_ome_metadata():
     datasource = request.args.get('datasource')
-    resp = data_model.get_ome_metadata(datasource)
-    return serialize_and_submit_json(resp)
+    resp = data_model.get_ome_metadata(datasource).json()
+    # OME-Types handles jsonify itself, so skip the orjson conversion
+    response = app.response_class(
+        response=resp,
+        mimetype='application/json'
+    )
+    return response
 
 
 @app.route('/download_gating_csv', methods=['POST'])

requirements.yml

@@ -2,6 +2,7 @@ name: minerva_analysis
 channels:
   - conda-forge
 dependencies:
+  - python=3.7
   - Flask=1.1.2
   - flask-sqlalchemy
   - numpy
@@ -18,7 +19,7 @@ dependencies:
   - pyinstaller
   - pip
   - pip:
-      - ome-types==0.2.0
+      - ome-types==0.2.9
       - opencv-python