diff --git a/vendor/meson.build b/vendor/meson.build index d56b22a..99c1621 100644 --- a/vendor/meson.build +++ b/vendor/meson.build @@ -1,20 +1,22 @@ vendor_cpp_sources = files([ 'edlib/edlib/src/edlib.cpp', + 'rampler/src/sampler.cpp', - 'rampler/src/sequence.cpp', + 'spoa/src/alignment_engine.cpp', + 'spoa/src/dispatcher.cpp', 'spoa/src/graph.cpp', - 'spoa/src/sequence.cpp', - 'spoa/src/simd_alignment_engine.cpp', + 'spoa/src/simd_alignment_engine_dispatch.cpp', 'spoa/src/sisd_alignment_engine.cpp', - 'thread_pool/src/thread_pool.cpp' ]) vendor_include_directories = [ - include_directories('bioparser/include'), include_directories('edlib/edlib/include'), include_directories('rampler/src'), include_directories('spoa/include'), + include_directories('spoa/vendor/cereal/include'), + include_directories('spoa/vendor/bioparser/include'), + include_directories('spoa/vendor/bioparser/vendor/biosoup/include'), include_directories('thread_pool/include') ]