From a2cfcac281d312a73912a97d6d960404f516c389 Mon Sep 17 00:00:00 2001 From: Robert Vaser Date: Sun, 19 Dec 2021 17:16:50 +0100 Subject: [PATCH] Fix GPU parameters --- scripts/racon_wrapper.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/racon_wrapper.py b/scripts/racon_wrapper.py index d95003a..f39d33e 100644 --- a/scripts/racon_wrapper.py +++ b/scripts/racon_wrapper.py @@ -126,14 +126,14 @@ def run(self): '-m', str(self.match), '-x', str(self.mismatch), '-g', str(self.gap), - '-t', str(self.threads), - self.subsampled_sequences, self.overlaps, ""]) + '-t', str(self.threads)]) if (@racon_wrapper_enable_cuda@): if (self.cuda_banded_alignment == True): racon_params.append('-b') racon_params.extend([ '--cudaaligner-band-width', str(self.cudaaligner_band_width), '--cudaaligner-batches', str(self.cudaaligner_batches), '-c', str(self.cudapoa_batches)]) + racon_params.extend([self.subsampled_sequences, self.overlaps, ""]) for target_sequences_part in self.split_target_sequences: eprint('[RaconWrapper::run] processing data with racon')