choose_readlengths does not work properly

[vschnei]

Hey Lorenzo,
first of all good job. I like Ribo-seQC and SaTAnn very much.

While applying Ribo-seQC on a small Ribo-seq library, I got the following error:

Error in base::colMeans(x, na.rm = na.rm, dims = dims, ...) :
'x' must be an array of at least two dimensions

The problem is that during read length estimation (MT) only one transcript shows signal which causes a data frame drop. This can be easily solved by:

codon_gain<- codon_gain[!apply(codon_gain,1,FUN = function(y){sum(is.na(y))>0}),, drop=F]

best,
Valentin

[lcalviell]

Thank you Valentin, will do! Sorry for seeing this late