P_sites_bins only has 5000 genes?

[Leo-ccc]

Hello Calviello:

I retrieved 'P_sites_bins' from 'xxx_results_RiboseQC_all' and found that it only had 5000 transcripts, though I use the parameter ' Fast_mode = F'.
For example:
profiles_P_sites_28nt <- as.data.frame(res_all[["profiles_P_sites"]][["P_sites_bins"]][["nucl"]][["28"]])

I want to use all annotated protein coding genes to plot CDS metagene, please reply to me if you know the right method.

Thank you!