From e28a55be86b298708a2a67c924d665a00b8d829c Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Sat, 29 Apr 2023 12:21:09 -0400
Subject: [PATCH] Release minimap2-2.26 (r1175)

---
 NEWS.md          | 9 +++++++++
 README.md        | 4 ++--
 cookbook.md      | 4 ++--
 minimap.h        | 2 +-
 minimap2.1       | 2 +-
 misc/paftools.js | 2 +-
 python/mappy.pyx | 2 +-
 setup.py         | 2 +-
 8 files changed, 18 insertions(+), 9 deletions(-)

diff --git a/NEWS.md b/NEWS.md
index b18f53fe..ff0dfbd6 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,12 @@
+Release 2.26-r1175 (29 April 2023)
+----------------------------------
+
+Fixed the broken Python package. This is the only change.
+
+(2.25: 25 April 2023, r1173)
+
+
+
 Release 2.25-r1173 (25 April 2023)
 ----------------------------------
 
diff --git a/README.md b/README.md
index 13d00c31..4bfdae16 100644
--- a/README.md
+++ b/README.md
@@ -74,8 +74,8 @@ Detailed evaluations are available from the [minimap2 paper][doi] or the
 Minimap2 is optimized for x86-64 CPUs. You can acquire precompiled binaries from
 the [release page][release] with:
 ```sh
-curl -L https://github.com/lh3/minimap2/releases/download/v2.25/minimap2-2.25_x64-linux.tar.bz2 | tar -jxvf -
-./minimap2-2.25_x64-linux/minimap2
+curl -L https://github.com/lh3/minimap2/releases/download/v2.26/minimap2-2.26_x64-linux.tar.bz2 | tar -jxvf -
+./minimap2-2.26_x64-linux/minimap2
 ```
 If you want to compile from the source, you need to have a C compiler, GNU make
 and zlib development files installed. Then type `make` in the source code
diff --git a/cookbook.md b/cookbook.md
index cbaed916..428f1179 100644
--- a/cookbook.md
+++ b/cookbook.md
@@ -31,8 +31,8 @@ To acquire the data used in this cookbook and to install minimap2 and paftools,
 please follow the command lines below:
 ```sh
 # install minimap2 executables
-curl -L https://github.com/lh3/minimap2/releases/download/v2.25/minimap2-2.25_x64-linux.tar.bz2 | tar jxf -
-cp minimap2-2.25_x64-linux/{minimap2,k8,paftools.js} .  # copy executables
+curl -L https://github.com/lh3/minimap2/releases/download/v2.26/minimap2-2.26_x64-linux.tar.bz2 | tar jxf -
+cp minimap2-2.26_x64-linux/{minimap2,k8,paftools.js} .  # copy executables
 export PATH="$PATH:"`pwd`                               # put the current directory on PATH
 # download example datasets
 curl -L https://github.com/lh3/minimap2/releases/download/v2.10/cookbook-data.tgz | tar zxf -
diff --git a/minimap.h b/minimap.h
index f4466ac0..504bdc8f 100644
--- a/minimap.h
+++ b/minimap.h
@@ -5,7 +5,7 @@
 #include <stdio.h>
 #include <sys/types.h>
 
-#define MM_VERSION "2.25-r1173"
+#define MM_VERSION "2.26-r1175"
 
 #define MM_F_NO_DIAG       (0x001LL) // no exact diagonal hit
 #define MM_F_NO_DUAL       (0x002LL) // skip pairs where query name is lexicographically larger than target name
diff --git a/minimap2.1 b/minimap2.1
index 573b77fe..9e339716 100644
--- a/minimap2.1
+++ b/minimap2.1
@@ -1,4 +1,4 @@
-.TH minimap2 1 "25 April 2023" "minimap2-2.25 (r1173)" "Bioinformatics tools"
+.TH minimap2 1 "29 April 2023" "minimap2-2.26 (r1175)" "Bioinformatics tools"
 .SH NAME
 .PP
 minimap2 - mapping and alignment between collections of DNA sequences
diff --git a/misc/paftools.js b/misc/paftools.js
index 5f4cd64f..a02e332b 100755
--- a/misc/paftools.js
+++ b/misc/paftools.js
@@ -1,6 +1,6 @@
 #!/usr/bin/env k8
 
-var paftools_version = '2.25-r1173';
+var paftools_version = '2.26-r1175';
 
 /*****************************
  ***** Library functions *****
diff --git a/python/mappy.pyx b/python/mappy.pyx
index 8e65d202..53eea5c3 100644
--- a/python/mappy.pyx
+++ b/python/mappy.pyx
@@ -3,7 +3,7 @@ from libc.stdlib cimport free
 cimport cmappy
 import sys
 
-__version__ = '2.25'
+__version__ = '2.26'
 
 cmappy.mm_reset_timer()
 
diff --git a/setup.py b/setup.py
index c7a1f5d2..fa6d0860 100644
--- a/setup.py
+++ b/setup.py
@@ -23,7 +23,7 @@ def readme():
 
 setup(
 	name = 'mappy',
-	version = '2.25',
+	version = '2.26',
 	url = 'https://github.com/lh3/minimap2',
 	description = 'Minimap2 python binding',
 	long_description = readme(),