diff --git a/src/pipelines/canu/SequenceStore.pm b/src/pipelines/canu/SequenceStore.pm index 6c18ce506..0f4e85698 100644 --- a/src/pipelines/canu/SequenceStore.pm +++ b/src/pipelines/canu/SequenceStore.pm @@ -418,7 +418,7 @@ sub generateReadLengthHistogram ($$) { $cmd .= " -raw \\\n" if ($tag eq "cor"); $cmd .= " -corrected \\\n" if ($tag eq "obt"); $cmd .= " -corrected -trimmed \\\n" if ($tag eq "utg"); - $cmd .= " -histogram \\\n"; + $cmd .= " -uncompressed \\\n"; $cmd .= " -lengths \\\n"; $cmd .= "> ./$asm.seqStore/readlengths-$tag.dat \\\n"; $cmd .= "2> ./$asm.seqStore/readlengths-$tag.err \n"; @@ -462,6 +462,7 @@ sub generateReadLengthHistogram ($$) { $cmd .= " -raw \\\n" if ($tag eq "cor"); $cmd .= " -corrected \\\n" if ($tag eq "obt"); $cmd .= " -corrected -trimmed \\\n" if ($tag eq "utg"); + $cmd .= " -uncompressed \\\n"; $cmd .= " -histogram \\\n"; $cmd .= "> ./$asm.seqStore/readlengths-$tag.txt \\\n"; $cmd .= "2> ./$asm.seqStore/readlengths-$tag.err \n";