Crash trying to run with generate-graphs #33

dogo · 2021-03-27T15:30:23Z

I'm trying to run the command below but always crash.

Swift Code Metrics info

swift-code-metrics --version
swift-code-metrics 1.5.1

graphviz info

 brew info graphviz 
graphviz: stable 2.47.0 (bottled), HEAD
Graph visualization software from AT&T and Bell Labs
https://www.graphviz.org/
/usr/local/Cellar/graphviz/2.47.0 (301 files, 10.5MB) *
  Poured from bottle on 2021-03-27 at 12:24:11
From: https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/graphviz.rb
License: EPL-1.0
==> Dependencies
Build: autoconf ✔, automake ✔, bison ✘, pkg-config ✔
Required: gd ✔, gts ✔, libpng ✔, librsvg ✔, libtool ✔, pango ✔
==> Options
--HEAD
	Install HEAD version
==> Analytics
install: 79,005 (30 days), 201,535 (90 days), 631,622 (365 days)
install-on-request: 66,252 (30 days), 166,056 (90 days), 507,447 (365 days)
build-error: 0 (30 days)

Run log

swift-code-metrics --source . --artifacts metrics --exclude Pods --generate-graphs
NotificationServiceExtension is not linked with the rest of the project.
NotificationServiceExtension is not linked with the rest of the project.
Traceback (most recent call last):
  File "/usr/local/bin/swift-code-metrics", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/scm.py", line 76, in main
    from ._graphs_renderer import GraphsRender
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/_graphs_renderer.py", line 5, in <module>
    from ._graphs_presenter import GraphPresenter
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/_graphs_presenter.py", line 2, in <module>
    from ._graph_helpers import Graph
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/_graph_helpers.py", line 8, in <module>
    import pygraphviz as pgv
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/__init__.py", line 58, in <module>
    from .agraph import AGraph, Node, Edge, Attribute, ItemAttribute, DotError
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/agraph.py", line 22, in <module>
    from . import graphviz as gv
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/graphviz.py", line 28, in <module>
    _graphviz = swig_import_helper()
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/graphviz.py", line 24, in swig_import_helper
    _mod = imp.load_module('_graphviz', fp, pathname, description)
  File "/usr/local/Cellar/python@3.9/3.9.2_3/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py", line 242, in load_module
    return load_dynamic(name, filename, file)
  File "/usr/local/Cellar/python@3.9/3.9.2_3/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py", line 342, in load_dynamic
    return _load(spec)
ImportError: dlopen(/usr/local/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so, 2): Symbol not found: _PyIOBase_Type
  Referenced from: /usr/local/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so
  Expected in: flat namespace
 in /usr/local/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so

The text was updated successfully, but these errors were encountered:

weibel · 2021-04-08T20:55:54Z

I had to install pygraphviz v1.5 like this (graphviz is installed from brew)

pip3 install --install-option="--include-path=/usr/local/include/" --install-option="--library-path=/usr/local/opt/" pygraphviz==1.5

On the docs it sounds as the latest pygraphviz 1.7 has solved many setup issues compared to earlier version, but i was not able to make it work with swift-code-metrics

ericklborges · 2021-04-09T20:27:06Z

I am facing the same issue with the exact same output as @dogo

@weibel, I tried to downgrade pygraphviz as you suggested, but it was unsuccessful.

Swift Code Metrics info

swift-code-metrics --version

swift-code-metrics 1.5.1

graphviz info

brew info graphviz

graphviz: stable 2.47.0 (bottled), HEAD
Graph visualization software from AT&T and Bell Labs
https://www.graphviz.org/
/usr/local/Cellar/graphviz/2.47.0 (301 files, 10.5MB) *
  Poured from bottle on 2021-04-09 at 15:00:57
From: https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/graphviz.rb
License: EPL-1.0
==> Dependencies
Build: autoconf ✔, automake ✘, bison ✘, pkg-config ✔
Required: gd ✔, gts ✔, libpng ✔, librsvg ✔, libtool ✔, pango ✔
==> Options
--HEAD
	Install HEAD version
==> Analytics
install: 84,165 (30 days), 225,532 (90 days), 648,784 (365 days)
install-on-request: 70,881 (30 days), 187,067 (90 days), 524,062 (365 days)
build-error: 0 (30 days)

pygraphviz configuration

pip3 show pygraphviz

Name: pygraphviz
Version: 1.5
Summary: Python interface to Graphviz
Home-page: http://pygraphviz.github.io
Author: Aric Hagberg
Author-email: aric.hagberg@gmail.com
License: BSD
Location: /usr/local/lib/python3.9/site-packages
Requires:
Required-by: swift-code-metrics

Run log

swift-code-metrics --source <source-path> --artifacts <artifacts-path> --generate-graphs

Traceback (most recent call last):
  File "/usr/local/bin/swift-code-metrics", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/scm.py", line 76, in main
    from ._graphs_renderer import GraphsRender
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/_graphs_renderer.py", line 5, in <module>
    from ._graphs_presenter import GraphPresenter
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/_graphs_presenter.py", line 2, in <module>
    from ._graph_helpers import Graph
  File "/usr/local/lib/python3.9/site-packages/swift_code_metrics/_graph_helpers.py", line 8, in <module>
    import pygraphviz as pgv
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/__init__.py", line 58, in <module>
    from .agraph import AGraph, Node, Edge, Attribute, ItemAttribute, DotError
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/agraph.py", line 22, in <module>
    from . import graphviz as gv
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/graphviz.py", line 28, in <module>
    _graphviz = swig_import_helper()
  File "/usr/local/lib/python3.9/site-packages/pygraphviz/graphviz.py", line 24, in swig_import_helper
    _mod = imp.load_module('_graphviz', fp, pathname, description)
  File "/usr/local/Cellar/python@3.9/3.9.4/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py", line 242, in load_module
    return load_dynamic(name, filename, file)
  File "/usr/local/Cellar/python@3.9/3.9.4/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py", line 342, in load_dynamic
    return _load(spec)
ImportError: dlopen(/usr/local/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so, 2): Symbol not found: _PyIOBase_Type
  Referenced from: /usr/local/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so
  Expected in: flat namespace
 in /usr/local/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so

Any thoughts? 🤔

tfoltzfmr · 2021-08-11T00:05:24Z

I am having the same issues. I would love for a workaround or a fix.

Swift Code Metrics info

swift-code-metrics --version
swift-code-metrics 1.5.1

graphviz info

  brew info graphviz
graphviz: stable 2.48.0, HEAD
Graph visualization software from AT&T and Bell Labs
https://www.graphviz.org/
/Users/user/homebrew/Cellar/graphviz/2.48.0 (301 files, 8MB) *
  Built from source on 2021-08-10 at 15:16:56
From: https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/graphviz.rb
License: EPL-1.0
==> Dependencies
Build: autoconf ✔, automake ✔, bison ✔, pkg-config ✔
Required: gd ✔, gts ✔, libpng ✔, librsvg ✔, libtool ✔, pango ✔
==> Options
--HEAD
	Install HEAD version
==> Analytics
install: 76,979 (30 days), 232,635 (90 days), 757,473 (365 days)
install-on-request: 64,837 (30 days), 195,468 (90 days), 629,770 (365 days)
build-error: 0 (30 days)

Run log

swift-code-metrics --source /Users/user/Desktop/DevelopBranch/<source> --artifacts /Users/user/Desktop/Metrics/firstSet --generate-graphs
Traceback (most recent call last):
  File "/Users/user/homebrew/bin/swift-code-metrics", line 8, in <module>
    sys.exit(main())
  File "/Users/user/homebrew/lib/python3.9/site-packages/swift_code_metrics/scm.py", line 76, in main
    from ._graphs_renderer import GraphsRender
  File "/Users/user/homebrew/lib/python3.9/site-packages/swift_code_metrics/_graphs_renderer.py", line 5, in <module>
    from ._graphs_presenter import GraphPresenter
  File "/Users/user/homebrew/lib/python3.9/site-packages/swift_code_metrics/_graphs_presenter.py", line 2, in <module>
    from ._graph_helpers import Graph
  File "/Users/user/homebrew/lib/python3.9/site-packages/swift_code_metrics/_graph_helpers.py", line 8, in <module>
    import pygraphviz as pgv
  File "/Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/__init__.py", line 58, in <module>
    from .agraph import AGraph, Node, Edge, Attribute, ItemAttribute, DotError
  File "/Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/agraph.py", line 22, in <module>
    from . import graphviz as gv
  File "/Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/graphviz.py", line 28, in <module>
    _graphviz = swig_import_helper()
  File "/Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/graphviz.py", line 24, in swig_import_helper
    _mod = imp.load_module('_graphviz', fp, pathname, description)
  File "/Users/user/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py", line 242, in load_module
    return load_dynamic(name, filename, file)
  File "/Users/user/homebrew/Cellar/python@3.9/3.9.6/Frameworks/Python.framework/Versions/3.9/lib/python3.9/imp.py", line 342, in load_dynamic
    return _load(spec)
ImportError: dlopen(/Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so, 2): Symbol not found: _PyIOBase_Type
  Referenced from: /Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so
  Expected in: flat namespace
 in /Users/user/homebrew/lib/python3.9/site-packages/pygraphviz/_graphviz.cpython-39-darwin.so

tfoltzfmr · 2021-08-11T21:07:17Z

I finally got the graphs to work.

pip3 install cmake
pip3 install dlib
brew uninstall --ignore-dependencies python3
brew install python
pip3 install recordclass   
pip3 uninstall pygraphviz
pip3 install pygraphviz

I don't know if all those uninstall and install are required. I checked the function of generating graphs throughout, but it wasn't until I unistalled pygraphviz, then reinstalled it with 1.7 that it worked. I did get a message saying 1.5 was required, but it rand and generated my graphs.

dogo · 2021-08-12T04:46:05Z

Thanks @tfoltzfmr !

matsoftware · 2021-12-29T13:53:41Z

I've updated the minimum pygraphviz supported version and added support to M1. Can you try again and see if you're still facing any issues?

ericklborges · 2021-12-29T17:14:48Z

@matsoftware, I have updated pygraphviz and installed the version from master.
It worked flawlessly :D

dogo changed the title ~~Crash trying to run~~ Crash trying to run with generate-graphs Mar 29, 2021

matsoftware mentioned this issue Jan 2, 2022

Release 1.5.2 #42

Merged

matsoftware closed this as completed in #42 Jan 2, 2022

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Crash trying to run with generate-graphs #33

Crash trying to run with generate-graphs #33

dogo commented Mar 27, 2021

weibel commented Apr 8, 2021

ericklborges commented Apr 9, 2021

tfoltzfmr commented Aug 11, 2021

tfoltzfmr commented Aug 11, 2021

dogo commented Aug 12, 2021

matsoftware commented Dec 29, 2021

ericklborges commented Dec 29, 2021

Crash trying to run with generate-graphs #33

Crash trying to run with generate-graphs #33

Comments

dogo commented Mar 27, 2021

Swift Code Metrics info

graphviz info

Run log

weibel commented Apr 8, 2021

ericklborges commented Apr 9, 2021

Swift Code Metrics info

graphviz info

pygraphviz configuration

Run log

tfoltzfmr commented Aug 11, 2021

tfoltzfmr commented Aug 11, 2021

dogo commented Aug 12, 2021

matsoftware commented Dec 29, 2021

ericklborges commented Dec 29, 2021