Cant download any of the faa/fna/ffn/gbk file from the genome page when --docker is used

[TKlamydionaut]

Seems like the part that binds the results and assets folders together does not happen.
bind_path_results+=("${dir}/zdb/results/blast_DB/${run_name}":"${zdb_folder}/assets/blast_DB/${run_name}")

Also, the path for the gbk file download should be RunName/gbk/filtered instead of just RunName/gbk

[bkm]

Hello (Thomas, I guess?),

Does the blast interface work in dockers ?
I'll check into the genome files download.

Thanks for bringing this up.
Bastian

[TKlamydionaut]

Hello Bastian ! I didn't notice any problem while using Blast with the docker container. If anything comes up i'll make sure to make a new post. Thank you very much !

[tpillone]

Hello,
Some files from the asset folder cannot be accessed when using docker because they are symlinks to the work directory (e.g faa and fna from the "genome" page). Blast indexes are not symblinks and can be accessed without problems.
We could fix this by simply moving files to the result folder instead of making symlinks.

[bkm]

This should fix it. @tpillone could you take a look at the PR ? If it's alright, I'll create a conda package tonight.

[tpillone]

It looks good!