PhyloMAF - Phylogenetic Microbiome Analysis Framework
PhyloMAF is a novel comprehensive microbiome data analysis tool based on Python programming language. With memory efficient and extensible design, PhyloMAF have wide range of applications including but not limited to: post OTU picking microbiome data analysis, microbiome data meta-analysis, taxonomy based reference phylogenetic tree pruning and reconstruction, cross database data validation, primer design by taxonomic ranks, heterogeneous data retrieval from different databases including remote mega-databases like NCBI or Ensembl.
Check out the documentation for more.