diff --git a/nextflow/nextflow.config b/nextflow/nextflow.config index ddf375f..7a920ff 100755 --- a/nextflow/nextflow.config +++ b/nextflow/nextflow.config @@ -11,7 +11,7 @@ params { chain = "${launchDir}/sources/b37ToHg38.over.chain" reference.b37 = "/apps/data/1000G/phase1/human_g1k_v37_phiX.fasta" reference.b38 = "/apps/data/GRC/GRCh38/GRCh38_full_analysis_set_plus_decoy_hla.fa" - intermediateDir = "$PlaunchDir}/results" + intermediateDir = "${launchDir}/results" tmpDir = "${launchDir}/tmp" }