diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml index a53ed34..1c3324a 100644 --- a/.github/workflows/lint.yml +++ b/.github/workflows/lint.yml @@ -17,7 +17,7 @@ jobs: steps: - uses: actions/checkout@v2 - name: Test linting - uses: snakemake/snakemake-github-action@v1.18.0 + uses: snakemake/snakemake-github-action@v1.23.0 with: directory: . snakefile: workflow/Snakefile diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 61dc56f..07d2967 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -1,12 +1,12 @@ name: CI -# Controls when the action will run. +# Controls when the action will run. on: # Triggers the workflow on push or pull request events but only for the main branch push: - branches: [ main ] + branches: [main] pull_request: - branches: [ main ] + branches: [main] # Allows you to run this workflow manually from the Actions tab workflow_dispatch: @@ -16,21 +16,20 @@ jobs: regular_windows: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 - - name: Test workflow on regular sized windows - uses: snakemake/snakemake-github-action@v1.19.0 - with: - directory: . - snakefile: workflow/Snakefile - args: "--use-conda -j 3 --conda-cleanup-pkgs cache --conda-frontend mamba -p make_figures cooler cooler_density" + - uses: actions/checkout@v2 + - name: Test workflow on regular sized windows + uses: snakemake/snakemake-github-action@v1.23.0 + with: + directory: . + snakefile: workflow/Snakefile + args: "--use-conda -j 3 --conda-cleanup-pkgs cache --conda-frontend mamba -p make_figures cooler cooler_density" small_windows: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 - - name: Test workflow on small windows - uses: snakemake/snakemake-github-action@v1.19.0 - with: - directory: . - snakefile: workflow/Snakefile - args: "--use-conda -j 3 --conda-cleanup-pkgs cache --conda-frontend mamba --config window=400 -p make_figures cooler cooler_density" - \ No newline at end of file + - uses: actions/checkout@v2 + - name: Test workflow on small windows + uses: snakemake/snakemake-github-action@v1.23.0 + with: + directory: . + snakefile: workflow/Snakefile + args: "--use-conda -j 3 --conda-cleanup-pkgs cache --conda-frontend mamba --config window=400 -p make_figures cooler cooler_density"