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Find mean of a posterior sample #161

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ms609 opened this issue Sep 13, 2024 · 0 comments
Open

Find mean of a posterior sample #161

ms609 opened this issue Sep 13, 2024 · 0 comments

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@ms609
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ms609 commented Sep 13, 2024

"Centroid" algorithm uses tree search to find tree that minimises sum of squares to all trees in a posterior distribution
https://doi.org/10.1093/bioinformatics/btae514

Could this be (efficiently!) accomplished with arbitrary distances in TreeSearch? Could we explore variance etc as other statistical properties?

Probably the efficient answer from a CID perspective involves getting the whole process into C++ such that split similarities are cached and only recalculated when a TBR/SPR move changes split membership.

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