diff --git a/conf/juno.config b/conf/juno.config index 021148c..5bc1432 100644 --- a/conf/juno.config +++ b/conf/juno.config @@ -9,7 +9,7 @@ process { time = { 3.h * task.attempt } clusterOptions = "" scratch = true - beforeScript = "module load singularity/3.1.1; unset R_LIBS; catch_term () { echo 'caught USR2/TERM signal'; set +e; false; on_exit ; } ; trap catch_term USR2 TERM" + beforeScript = "module load singularity/3.7.1; unset R_LIBS; catch_term () { echo 'caught USR2/TERM signal'; set +e; false; on_exit ; } ; trap catch_term USR2 TERM" errorStrategy = { task.attempt <= 3 ? 'retry' : 'ignore' } maxRetries = 3 @@ -46,9 +46,9 @@ params { max_cpus = 24 max_time = "500.h" mem_per_core = true - reference_base = "/juno/work/taylorlab/cmopipeline/forte/" - igenomes_base = '/juno/work/taylorlab/cmopipeline/mskcc-igenomes/igenomes' - targets_base = '/juno/work/taylorlab/cmopipeline/forte/' + reference_base = "/juno/work/ccs/cmopipeline/forte/" + igenomes_base = '/juno/work/tempo/cmopipeline/mskcc-igenomes/igenomes' + targets_base = '/juno/work/ccs/cmopipeline/forte/' } env { @@ -59,5 +59,5 @@ singularity { enabled = true runOptions = "-B $TMPDIR" autoMounts = true - cacheDir = "/juno/work/taylorlab/cmopipeline/singularity_images/" + cacheDir = "/juno/work/tempo/cmopipeline/singularity_images/" }