diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml index 7e26f74..b2e8d4e 100644 --- a/.github/workflows/rworkflows.yml +++ b/.github/workflows/rworkflows.yml @@ -31,26 +31,6 @@ jobs: bioc: release r: auto steps: - - name: Install MEME suite - run: | - memeversion=5.5.5 - wget https://meme-suite.org/meme/meme-software/$memeversion/meme-$memeversion.tar.gz - tar zxf meme-$memeversion.tar.gz - cd meme-$memeversion - ./configure --prefix=$HOME/meme --with-url=http://meme-suite.org/ --enable-build-libxml2 --enable-build-libxslt - make - make test - make install - - name: Set MEME_BIN environment variable - run: echo "MEME_BIN=$HOME/meme/bin" >> $GITHUB_ENV - - name: Check for ame in MEME suite bin - run: | - if [ ! -f "$HOME/meme/bin/ame" ]; then - echo "ame executable not found in $HOME/meme/bin" - exit 1 - fi - echo "MEME suite (version $memeversion) successfully installed." - echo "MEME suite bin path: $MEME_BIN" - uses: neurogenomics/rworkflows@master with: run_bioccheck: ${{ true }}