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Functions like map_genes and aggregate_genes rely on "gprofiler" as the only method that can do gene synonym matching.
map_genes
aggregate_genes
However, this requires internet access and the gprofiler databases sometime breaks down randomly. For example, today during checks:
── Error (test-run_benchmark.R:3:5): run_benchmark works ─────────────────────── Error in `gprofiler2::gconvert(query = ranges, organism = species, ...)`: Bad request, response code 400 Backtrace:
Would be good to have non-gprofiler alternatives for all functions, including these.
The text was updated successfully, but these errors were encountered:
bschilder
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Functions like
map_genes
andaggregate_genes
rely on "gprofiler" as the only method that can do gene synonym matching.However, this requires internet access and the gprofiler databases sometime breaks down randomly.
For example, today during checks:
Would be good to have non-gprofiler alternatives for all functions, including these.
The text was updated successfully, but these errors were encountered: