From f6afff0d07f3b07322e98e2dd22530c059a4eec3 Mon Sep 17 00:00:00 2001 From: Marcel Ribeiro-Dantas Date: Tue, 5 Mar 2024 17:53:24 -0300 Subject: [PATCH] Apply minor changes to improve RNAseq section Signed-off-by: Marcel Ribeiro-Dantas --- docs/basic_training/rnaseq_pipeline.md | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/docs/basic_training/rnaseq_pipeline.md b/docs/basic_training/rnaseq_pipeline.md index c240d257..e3172455 100644 --- a/docs/basic_training/rnaseq_pipeline.md +++ b/docs/basic_training/rnaseq_pipeline.md @@ -190,10 +190,6 @@ To avoid being required to add `-with-docker` to your execution command every ti Viewing a channel with the [`view`](https://www.nextflow.io/docs/latest/operator.html#view) operator is a useful way to see what is in a channel and is useful for testing and debugging: -```groovy linenums="1" title="example.nf" -index_ch.view() -``` - !!! question "Exercise" Print the output of the `index_ch` channel by using the [view](https://www.nextflow.io/docs/latest/operator.html#view) operator. @@ -212,7 +208,7 @@ index_ch.view() Directives are used to specify the execution requirements of a process. For example, the `cpus` directive specifies the number of CPUs required to execute the process. Directives can be added under the `process` declaration. ```groovy linenums="22" title="script2.nf" -process INDEX { +process PROCESS_NAME { cpus 2 ... } @@ -220,7 +216,7 @@ process INDEX { !!! question "Exercise" - Add the `cpus` directive to the `SALMON` process to modify the number of CPUs allocated for its execution. + Add the `cpus` directive to the `INDEX` process to modify the number of CPUs allocated for its execution. ??? Solution