Update titer references for final plots

nextstrain · Feb 24, 2025 · 280ee0f · 280ee0f
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commit 280ee0f
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Showing 5 changed files with 9 additions and 3 deletions.
diff --git a/config/references_for_titer_plots/h1n1pdm/cell_hi.txt b/config/references_for_titer_plots/h1n1pdm/cell_hi.txt
@@ -2,8 +2,10 @@ A/Wisconsin/67/2022 # C.1.1, vaccine strain
 A/Victoria/4897/2022 # D
 A/Illinois/18/2023 # D.1
 A/Alaska/14/2023 # D.2
+A/Delaware/83/2024 # D.5
 A/Connecticut/17/2023 # C.1.8
 A/Michigan/59/2023 # C.1.9
+A/Missouri/124/2024 # C.1.9:113K,155E
 A/Tennessee/77/2024 # C.1.9:P137S
 A/Lisbon/188/2023 # C.1.9:216A
 A/Tokyo/EIS10-381/2024 # C.1.9.3
diff --git a/config/references_for_titer_plots/h3n2/cell_fra.txt b/config/references_for_titer_plots/h3n2/cell_fra.txt
@@ -1,10 +1,9 @@
 A/Massachusetts/18/2022 # J, vaccine strain
-A/Iowa/51/2023 # J.1
-A/Pennsylvania/98/2023 # J.1.1:214T
-A/Canberra/327/2023 # J.1.1:9N,275D
 A/Nevada/32/2023 # J.2
 A/DistrictOfColumbia/27/2023 # J.2:145N, vaccine strain
 A/Canberra/302/2023 # J.2:140R
+A/Oklahoma/5/2024 # J.2:158K
+A/Idaho/69/2023 # J.2:145N,189R
 A/Colorado/6/2024 # J.2.1
 A/Switzerland/47775/2024 # J.2.1:309I,63K,189R,208I
 A/Netherlands/10563/2023 # J.2.2

diff --git a/config/references_for_titer_plots/h3n2/cell_hi.txt b/config/references_for_titer_plots/h3n2/cell_hi.txt
@@ -4,7 +4,10 @@ A/Canberra/327/2023 # J.1.1:9N,275D
 A/Canberra/302/2023 # J.2:140R
 A/Croatia/10136RV/2023 # J.2:145N, vaccine strain
 A/DistrictOfColumbia/27/2023 # J.2:145N, vaccine strain
+A/Oklahoma/5/2024 # J.2:158K
 A/Norway/1952/2024 # J.2:145N,158K
+A/Idaho/69/2023 # J.2:145N,189R
+A/Pennsylvania/89/2023 # J.2:145G,223I
 A/Victoria/488/2024 # J.2:207R
 A/Switzerland/47775/2024 # J.2.1:309I,63K,189R,208I
 A/Netherlands/10563/2023 # J.2.2:51V

diff --git a/config/references_for_titer_plots/h3n2/egg_fra.txt b/config/references_for_titer_plots/h3n2/egg_fra.txt
@@ -1,5 +1,6 @@
 A/Thailand/8/2022-egg # J, vaccine strain
 A/Croatia/10136RV/2023-egg # J.2.c (145N), vaccine strain
 A/Kanagawa/IC2346/2023-egg # J.2.c (145N)
+A/Canberra/302/2023-egg # J.2:140R,195Y
 A/Victoria/2997/2023-egg # J.2:145N,246K HI
 A/Lisbon/216/2023-egg # J.2.2
diff --git a/config/references_for_titer_plots/vic/egg_hi.txt b/config/references_for_titer_plots/vic/egg_hi.txt
@@ -1,3 +1,4 @@
 B/Austria/1359417/2021-egg # C, vaccine strain
+B/Catalonia/2279261NS/2023-egg # C.5.1
 B/Switzerland/329/2024-egg # C.5.6:199A
 B/Victoria/41/2024-egg # C.5.7