From 7238956cb94112d1fcfb9151278eee330f51c203 Mon Sep 17 00:00:00 2001 From: JoseEspinosa Date: Tue, 23 Jul 2024 12:58:15 +0200 Subject: [PATCH] Address review comments --- conf/modules.config | 2 +- test.csv | 7 ------- 2 files changed, 1 insertion(+), 8 deletions(-) delete mode 100644 test.csv diff --git a/conf/modules.config b/conf/modules.config index eb028a67..2251e0ff 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -575,7 +575,7 @@ process { if (!params.skip_peak_annotation) { process { - withName: '.*:BAM_PEAKS_CALL_QC_ANNOTATE_MACS2_HOMER:HOMER_ANNOTATEPEAKS' { + withName: '.*:BAM_PEAKS_CALL_QC_ANNOTATE_MACS3_HOMER:HOMER_ANNOTATEPEAKS' { ext.args = '-gid' ext.prefix = { "${meta.id}_peaks" } publishDir = [ diff --git a/test.csv b/test.csv deleted file mode 100644 index c871931f..00000000 --- a/test.csv +++ /dev/null @@ -1,7 +0,0 @@ -sample,fastq_1,fastq_2,replicate,antibody,control,control_replicate -SPT5_T0,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_2.fastq.gz,1,SPT5,SPT5_INPUT,1 -SPT5_T0,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_2.fastq.gz,2,SPT5,SPT5_INPUT,2 -SPT5_T15,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz,1,SPT5,SPT5_INPUT,1 -SPT5_T15,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_2.fastq.gz,2,SPT5,SPT5_INPUT,2 -SPT5_INPUT,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz,1,,, -SPT5_INPUT,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz,2,,,