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plotHeatmap #153

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ivokwee opened this issue May 21, 2020 · 3 comments
Closed

plotHeatmap #153

ivokwee opened this issue May 21, 2020 · 3 comments
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feature-request Request to add new functionality

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@ivokwee
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ivokwee commented May 21, 2020

Hi. In the deepTools module, it would be nice to include plotHeatmap inside the pipeline as the computeMatrix is already calculated. Thanks. Ivo
@drpatelh drpatelh added the feature-request Request to add new functionality label May 30, 2020
@drpatelh
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Hi @ivokwee I thought this may be a bit less useful because as it stands the heatmap would only be generated for a single IP (and maybe its corresponding IP). Given the plotProfile already gives you an idea as to the "average" enrichment at the TSS and it can be combined in MultiQC I thought that may be more useful?

@ivokwee
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ivokwee commented May 31, 2020

Well having both is cool. Also the kmeans clustering heatmap is very nice. But if you want the pipeline to be "minimal but complete" then maybe let the user can do it afterwards manually.

@drpatelh
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drpatelh commented Jun 2, 2020

Added this in here for you @ivokwee 23cc664 Thanks for the suggestion 👍

@drpatelh drpatelh closed this as completed Jun 2, 2020
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@ivokwee @drpatelh