Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Language server correct of arriba module #576

Open
rannick opened this issue Dec 6, 2024 · 0 comments
Open

Language server correct of arriba module #576

rannick opened this issue Dec 6, 2024 · 0 comments
Assignees
Labels
bug Something isn't working

Comments

@rannick
Copy link
Collaborator

rannick commented Dec 6, 2024

Description of the bug

    def args = task.ext.args ?: ''
    def prefix = task.ext.prefix ?: "${meta.id}"
    def arg_blacklist = blacklist ? "-b $blacklist" : "-f blacklist"
    def arg_known_fusions = known_fusions ? "-k $known_fusions" : ""
    def arg_cytobands = cytobands ? "-d $cytobands" : ""
    def arg_protein_domains = protein_domains ? "-p $protein_domains" : ""

Command used and terminal output

Relevant files

No response

System information

No response

@rannick rannick added the bug Something isn't working label Dec 6, 2024
@rannick rannick self-assigned this Dec 6, 2024
# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
bug Something isn't working
Projects
Status: No status
Development

No branches or pull requests

1 participant