From 0833e8913184b0cc2f257d4950897af136940846 Mon Sep 17 00:00:00 2001 From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com> Date: Wed, 20 Dec 2023 00:47:13 +0000 Subject: [PATCH 1/2] Update actions/upload-artifact action to v4 --- .github/workflows/create-lint-wf.yml | 2 +- .github/workflows/create-test-lint-wf-template.yml | 2 +- .github/workflows/create-test-wf.yml | 2 +- .github/workflows/sync.yml | 2 +- nf_core/pipeline-template/.github/workflows/awsfulltest.yml | 2 +- nf_core/pipeline-template/.github/workflows/awstest.yml | 2 +- nf_core/pipeline-template/.github/workflows/linting.yml | 2 +- 7 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/create-lint-wf.yml b/.github/workflows/create-lint-wf.yml index 57dbe86d65..776fd3d3ce 100644 --- a/.github/workflows/create-lint-wf.yml +++ b/.github/workflows/create-lint-wf.yml @@ -142,7 +142,7 @@ jobs: - name: Upload log file artifact if: ${{ always() }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: nf-core-log-file path: create-lint-wf/log.txt diff --git a/.github/workflows/create-test-lint-wf-template.yml b/.github/workflows/create-test-lint-wf-template.yml index 37cbf65c7d..360a9919c7 100644 --- a/.github/workflows/create-test-lint-wf-template.yml +++ b/.github/workflows/create-test-lint-wf-template.yml @@ -145,7 +145,7 @@ jobs: - name: Upload log file artifact if: ${{ always() }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: nf-core-log-file path: create-test-lint-wf/artifact_files.tar diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml index 026b0a889b..7df8779320 100644 --- a/.github/workflows/create-test-wf.yml +++ b/.github/workflows/create-test-wf.yml @@ -53,7 +53,7 @@ jobs: - name: Upload log file artifact if: ${{ always() }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: nf-core-log-file path: create-test-wf/log.txt diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml index 94f8ee54e2..5451842530 100644 --- a/.github/workflows/sync.yml +++ b/.github/workflows/sync.yml @@ -78,7 +78,7 @@ jobs: - name: Upload sync log file artifact if: ${{ always() }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: sync_log_${{ matrix.pipeline }} path: sync_log_${{ matrix.pipeline }}.txt diff --git a/nf_core/pipeline-template/.github/workflows/awsfulltest.yml b/nf_core/pipeline-template/.github/workflows/awsfulltest.yml index 2f83a0962c..688d61b18d 100644 --- a/nf_core/pipeline-template/.github/workflows/awsfulltest.yml +++ b/nf_core/pipeline-template/.github/workflows/awsfulltest.yml @@ -31,7 +31,7 @@ jobs: } profiles: test_full - - uses: actions/upload-artifact@v3 + - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: Tower debug log file path: | diff --git a/nf_core/pipeline-template/.github/workflows/awstest.yml b/nf_core/pipeline-template/.github/workflows/awstest.yml index 9a0bf4afbc..dbf067675f 100644 --- a/nf_core/pipeline-template/.github/workflows/awstest.yml +++ b/nf_core/pipeline-template/.github/workflows/awstest.yml @@ -25,7 +25,7 @@ jobs: } profiles: test - - uses: actions/upload-artifact@v3 + - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: Tower debug log file path: | diff --git a/nf_core/pipeline-template/.github/workflows/linting.yml b/nf_core/pipeline-template/.github/workflows/linting.yml index 94aa5278be..6d63e1cd12 100644 --- a/nf_core/pipeline-template/.github/workflows/linting.yml +++ b/nf_core/pipeline-template/.github/workflows/linting.yml @@ -99,7 +99,7 @@ jobs: - name: Upload linting log file artifact if: ${{ always() }} - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 with: name: linting-logs path: | From 602765d0c8cc04859d56b4a7031b8dc97f58299c Mon Sep 17 00:00:00 2001 From: mashehu Date: Fri, 5 Jan 2024 11:50:25 +0100 Subject: [PATCH 2/2] fix version number --- .github/workflows/create-lint-wf.yml | 2 +- .github/workflows/create-test-lint-wf-template.yml | 2 +- .github/workflows/create-test-wf.yml | 2 +- .github/workflows/sync.yml | 2 +- nf_core/pipeline-template/.github/workflows/awsfulltest.yml | 2 +- nf_core/pipeline-template/.github/workflows/awstest.yml | 2 +- nf_core/pipeline-template/.github/workflows/linting.yml | 2 +- 7 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.github/workflows/create-lint-wf.yml b/.github/workflows/create-lint-wf.yml index e11cee9122..cd1c54bc93 100644 --- a/.github/workflows/create-lint-wf.yml +++ b/.github/workflows/create-lint-wf.yml @@ -138,7 +138,7 @@ jobs: - name: Upload log file artifact if: ${{ always() }} - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + uses: actions/upload-artifact@v4 with: name: nf-core-log-file path: create-lint-wf/log.txt diff --git a/.github/workflows/create-test-lint-wf-template.yml b/.github/workflows/create-test-lint-wf-template.yml index 3606cec8d3..5260edc60a 100644 --- a/.github/workflows/create-test-lint-wf-template.yml +++ b/.github/workflows/create-test-lint-wf-template.yml @@ -143,7 +143,7 @@ jobs: - name: Upload log file artifact if: ${{ always() }} - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + uses: actions/upload-artifact@v4 with: name: nf-core-log-file path: create-test-lint-wf/artifact_files.tar diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml index 3873949339..ef3edd135e 100644 --- a/.github/workflows/create-test-wf.yml +++ b/.github/workflows/create-test-wf.yml @@ -59,7 +59,7 @@ jobs: - name: Upload log file artifact if: ${{ always() }} - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + uses: actions/upload-artifact@v4 with: name: nf-core-log-file path: create-test-wf/log.txt diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml index 4e754baf1d..9bbc12cf4b 100644 --- a/.github/workflows/sync.yml +++ b/.github/workflows/sync.yml @@ -78,7 +78,7 @@ jobs: - name: Upload sync log file artifact if: ${{ always() }} - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + uses: actions/upload-artifact@v4 with: name: sync_log_${{ matrix.pipeline }} path: sync_log_${{ matrix.pipeline }}.txt diff --git a/nf_core/pipeline-template/.github/workflows/awsfulltest.yml b/nf_core/pipeline-template/.github/workflows/awsfulltest.yml index 688d61b18d..4c9fd69fcc 100644 --- a/nf_core/pipeline-template/.github/workflows/awsfulltest.yml +++ b/nf_core/pipeline-template/.github/workflows/awsfulltest.yml @@ -31,7 +31,7 @@ jobs: } profiles: test_full - - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + - uses: actions/upload-artifact@v4 with: name: Tower debug log file path: | diff --git a/nf_core/pipeline-template/.github/workflows/awstest.yml b/nf_core/pipeline-template/.github/workflows/awstest.yml index dbf067675f..25726aa1c9 100644 --- a/nf_core/pipeline-template/.github/workflows/awstest.yml +++ b/nf_core/pipeline-template/.github/workflows/awstest.yml @@ -25,7 +25,7 @@ jobs: } profiles: test - - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + - uses: actions/upload-artifact@v4 with: name: Tower debug log file path: | diff --git a/nf_core/pipeline-template/.github/workflows/linting.yml b/nf_core/pipeline-template/.github/workflows/linting.yml index 96b8891e0d..a267f1ec14 100644 --- a/nf_core/pipeline-template/.github/workflows/linting.yml +++ b/nf_core/pipeline-template/.github/workflows/linting.yml @@ -60,7 +60,7 @@ jobs: - name: Upload linting log file artifact if: ${{ always() }} - uses: actions/upload-artifact@c7d193f32edcb7bfad88892161225aeda64e9392 # v4 + uses: actions/upload-artifact@v4 with: name: linting-logs path: |