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Fieldmap integration #7

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oesteban opened this issue Apr 14, 2021 · 0 comments
Open

Fieldmap integration #7

oesteban opened this issue Apr 14, 2021 · 0 comments
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@oesteban
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oesteban commented Apr 14, 2021

Currently, we just have a placeholder.

My idea is to integrate this in the LOGO splitter:

  • We already have a copy of the fieldmap (I'd say the coefficients of its B-Spline representation) in the DWI object.
  • We already have a list of realigning affines (which are identity in the first step).
  • We then project the fieldmap coefficients into the left-out gradient through the corresponding affine.
  • We interpolate the fieldmap at every voxel from the coefficients.
  • We resample the left-out gradient with the projected fieldmap (I think nitransforms should be able to do this already).
  • We return a left-out gradient after unwarping!

Therefore, this simplifies something that otherwise would be really convoluted: it's not just that the fieldmap is included in the process, it is that we will be able to account for susceptibility-distortions in the moved space of each volume (which makes the wapring a little bit different for each orientation)

@oesteban oesteban self-assigned this May 14, 2021
@oesteban oesteban transferred this issue from nipreps/eddymotion Dec 19, 2024
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