tools: update lint-md-dependencies

Update to @rollup/plugin-node-resolve@13.1.3, rollup@2.64.0, and
to-vfile@7.2.3.

PR-URL: #41440
Reviewed-By: Rich Trott <rtrott@gmail.com>
Reviewed-By: James M Snell <jasnell@gmail.com>

Author: nodejs-github-bot