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42 Open 121 Closed
42 Open 121 Closed
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Issues list

chrom1, chrom2 and pair_type fields are now required in pairs file header
#264 opened Feb 19, 2025 by js2264
Identical read_len1 and read_len2 reported with different real read lengths in R1&2 pairs
#262 opened Jan 14, 2025 by Phlya
@agalitsyna
5
Could support single cell Hi-C ?
#255 opened Nov 15, 2024 by liufuyan2016
pairtools:Empty of fully duplicated library, can't estimate complexity
#254 opened Nov 4, 2024 by Wong718
8
Pairtools phase - issue with phasing
#253 opened Oct 11, 2024 by ddepierre
convert pairtools result to dense matrix
#252 opened Sep 30, 2024 by BenxiaHu
Python 3.13 removes pipes
#250 opened Sep 13, 2024 by stefanor
1
single-end mode is broken in v1.1.0
#247 opened Sep 4, 2024 by niederhuth
17
Support for lowercase SAM tags in pairtools parse2
#245 opened Jul 30, 2024 by LuJiansen
Extracting contact matrices from pairs file
#243 opened Jul 13, 2024 by arodel21
2
pairtools dedup: invalid value encountered in divide
#242 opened Jun 15, 2024 by gbdnorden
1
Scaling by pairs error
#240 opened May 9, 2024 by DekkerBastiaan
1
Updating the ReadTheDocs
#238 opened Apr 29, 2024 by SaimMomin12
raise an error/warning if chromosome names in .chrom.sizes and bwa index differ too much
#235 opened Apr 10, 2024 by golobor
Wording in pairtools parse2 for --max-insert-size
#232 opened Apr 1, 2024 by bskubi
Memory overconsumption/leak (?) in pairtools restrict
#228 opened Mar 27, 2024 by bskubi
parse vs parse2 difference in default behavior for --flip?
#227 opened Mar 27, 2024 by bskubi
All pairs are corrupt ("XX")
#221 opened Mar 23, 2024 by lu-r-lu
6
stats redesign
#216 opened Mar 17, 2024 by golobor
2
Why reading using pipes rather than another method?
#210 opened Mar 13, 2024 by gdolsten
1
There is no instruction on how to test the project.
#208 opened Feb 25, 2024 by Unique-Usman
pipe error with bwa-mem2.avx512bw (2.2.1)
#207 opened Feb 18, 2024 by pashapu43
1
warning [E::idx_find_and_load] Could not retrieve index file for
#205 opened Jan 24, 2024 by CCCKW
9
'xcats' positional argument error in coverage_by_chrom
#197 opened Dec 19, 2023 by laramiemckenna
4
Parse2 clarification
#193 opened Nov 30, 2023 by NMaziak
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