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Improve plasmid annotation #31

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oschwengers opened this issue Nov 27, 2020 · 0 comments

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oschwengers commented Nov 27, 2020

Superseede UniRef100/UniRef90 annotations by the following specialized plasmid protein DBs:

Mobilization proteins:

MobScan: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937521 https://castillo.dicom.unican.es/mobscan_about/ https://castillo.dicom.unican.es/mobscan_about/MOBfamDB.gz

Conjugation proteins:

CONJScan https://github.com/gem-pasteur/Macsyfinder_models/tree/master/models/Conjugation http://dx.doi.org/10.1371/journal.pone.0110726 http://dx.doi.org/10.1038/srep23080

oschwengers added the enhancement label

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