Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

Jump to bottom

map2slim memory requirements #263

Open
emrobe opened this issue Sep 10, 2018 · 0 comments
Open

map2slim memory requirements #263

emrobe opened this issue Sep 10, 2018 · 0 comments

Comments

@emrobe
Copy link

emrobe commented Sep 10, 2018

Hi,
I'm trying to use the --map2slim functionality to map a gaf-file to metagenomics slim. It' s 90+ GB in size. The process owltools starts swapping and dies at 0,5 TB (Yes, Terabyte) memory usage. Any way around this (except splitting my file into X pieces after prototyping size vs. memory usage)?
# for free to join this conversation on GitHub. Already have an account? # to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@emrobe