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Clarify in PATO the distinction between mislocalised and dislocated #501

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rays22 opened this issue Jun 16, 2022 · 2 comments · Fixed by #503
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Clarify in PATO the distinction between mislocalised and dislocated #501

rays22 opened this issue Jun 16, 2022 · 2 comments · Fixed by #503
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rays22 commented Jun 16, 2022

Clarify the distinction between mislocalised PATO:0000628 and dislocated PATO:0001852.
See [comment]((obophenotype/upheno#829 (comment))

  • position PATO:0000140 A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
    • displaced PATO:0002181 A positional quality inhering in a bearer by virtue the bearer's being changed in position.
      • mislocalised PATO:0000628 A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.
      • dislocated PATO:0001852 A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position.
@rays22 rays22 added the upheno uPheno related tickets label Jun 16, 2022
@rays22 rays22 self-assigned this Jun 16, 2022
@rays22 rays22 mentioned this issue Jun 16, 2022
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rays22 commented Jun 16, 2022

  • need a report of usage of
    mislocalised PATO:0000628 A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.
    dislocated PATO:0001852 A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position.

@dosumis dosumis mentioned this issue Jun 16, 2022
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dosumis commented Jun 16, 2022

Ticket can be closed on merge #503. New issue #505

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Update pato-edit.obo, modify definition of dislocated pato-ontology/pato
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