From c4eb362888e114c4369e090a1f7da71ab3cb0596 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Yann=20F=C3=A9at?=
 <53322938+yannfeat@users.noreply.github.com>
Date: Fri, 12 Jan 2024 19:35:39 +0100
Subject: [PATCH] Delete dependencies.R

---
 dependencies.R | 42 ------------------------------------------
 1 file changed, 42 deletions(-)
 delete mode 100644 dependencies.R

diff --git a/dependencies.R b/dependencies.R
deleted file mode 100644
index e06bb94..0000000
--- a/dependencies.R
+++ /dev/null
@@ -1,42 +0,0 @@
-#!/usr/bin/env Rscript
-
-# Install latest ackages from Github
-# Requires dev version of covr (>= 3.5.1.9003)
-# Also install other package dependencies (for tests)
-github_packages <- c(
-    "r-lib/covr",
-    "pharmaR/riskmetric",
-    "Genentech/covtracer"
-)
-lapply(github_packages, remotes::install_github)
-
-# CRAN
-options(repos = c("https://cloud.r-project.org/"))
-ncores <- parallel::detectCores(all.tests = FALSE, logical = TRUE)
-if (!require("git2r")) install.packages("git2r", upgrade = "never", Ncpus = ncores)
-if (!require("kableExtra")) install.packages("kableExtra", upgrade = "never", Ncpus = ncores)
-if (!require("tinytex")) install.packages("tinytex", upgrade = "never", Ncpus = ncores)
-
-# Conditionally install TinyTex
-if(!dir.exists(paste(Sys.getenv("RUNNER_TEMP"), "TinyTeX", sep="/"))) {
-# nolint start
-  tinytex_installer <- '
-export TINYTEX_DIR=${RUNNER_TEMP}/TinyTeX
-wget -qO- "https://raw.githubusercontent.com/yihui/tinytex/master/tools/install-unx.sh" | sh -s - --admin --no-path
-mkdir -p ${RUNNER_TEMP}/TinyTeX
-cp -r ~/.TinyTeX/. ${RUNNER_TEMP}/TinyTeX
-rm -rf ~/.TinyTeX
-${RUNNER_TEMP}/TinyTeX/bin/*/tlmgr path add
-tlmgr update --self
-tlmgr install latex-bin luatex xetex ae bibtex context inconsolata listings makeindex metafont mfware parskip pdfcrop tex tools url xkeyval
-'
-  # nolint end
-  system(tinytex_installer)
-  tinytex::r_texmf()
-  permission_update <- '
-chown -R root:staff ${RUNNER_TEMP}/TinyTeX
-chmod -R g+w ${RUNNER_TEMP}/TinyTeX
-chmod -R g+wx ${RUNNER_TEMP}/TinyTeX/bin
-'
-  system(permission_update)
-}