diff --git a/.travis.yml b/.travis.yml index 36aa5f0..ae25324 100644 --- a/.travis.yml +++ b/.travis.yml @@ -5,7 +5,7 @@ os: - osx julia: - - 0.7 + - 1.0 - nightly notifications: diff --git a/REQUIRE b/REQUIRE index ad1ef65..6911c8a 100644 --- a/REQUIRE +++ b/REQUIRE @@ -1,4 +1,4 @@ -julia 0.7 +julia 1.0 GenomicFeatures 1.0.0 RLEVectors 0.7.1 DataFrames 0.0.1 diff --git a/benchmark/.#benchmark.R b/benchmark/.#benchmark.R deleted file mode 120000 index eff8a0d..0000000 --- a/benchmark/.#benchmark.R +++ /dev/null @@ -1 +0,0 @@ -phaverty@phaverty-PFG8WL.37002 \ No newline at end of file diff --git a/benchmark/benchmark.jl b/benchmark/benchmark.jl index da20675..cabf0fd 100644 --- a/benchmark/benchmark.jl +++ b/benchmark/benchmark.jl @@ -19,12 +19,12 @@ macro timeit(ex) end end -#bam_file = "GSE25840_GSM424320_GM06985_gencode_spliced.head.bam" +bam_file = "GSE25840_GSM424320_GM06985_gencode_spliced.head.bam" #bam_path = joinpath(dirname(pathof(GenomicVectors)),"BAM", bam_file) -#bam_path = "/Users/phaverty/R1039_LIB3086_SAM636333_L4_NXG2275.analyzed.bam" +bam_path = "/Users/phaverty/R1039_LIB3086_SAM636333_L4_NXG2275.analyzed.bam" bam_path = "/Users/phaverty/GSE25840_GSM424320_GM06985_gencode_spliced.head.bam" reader = open(BAM.Reader, bam_path) -gr = GenomicRanges("hg19", reader) +@time gr = GenomicRanges("hg19", reader) timings = DataFrame() timings[:language] = "julia"