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Implement element sniffing #111

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ielis opened this issue Nov 1, 2022 · 0 comments · Fixed by #171
Closed

Implement element sniffing #111

ielis opened this issue Nov 1, 2022 · 0 comments · Fixed by #171

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@ielis
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ielis commented Nov 1, 2022

Implement functionality for top-level element sniffing, to detect if the input is phenopacket, family, or cohort. The functionality is used in all I/O CLI commands if the user does not provide the -e | --element option.

The stubs are present in phenopacket-tools-util at org/phenopackets/phenopackettools/util/format/ElementSniffer.java.
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Improve format and element sniffing ielis/phenopacket-tools
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