simulation.carp

Simulation {
    mesh : Mesh
    input_file : string
    output_folder : string
    bidomain : bool
    num_cores : int
    stimulus : Stimulus     // Needs to be linked to mesh in some way, partly for error checking that its valid
}

Mesh {
    name : string           // 'path/to/mesh'
    heart_domains : list    // ['Ventricle', 'Atrium', 'Purkinje']
    tissue_domains : list
}

Heart {
    cell_model : string     // Check to make sure that this is valid
    tag : list              // Need to check all heart tags are here
}                           // Should also check that all tags are accounted for by the different tissue types
                            // or at least think of a warning (count extras as bath?)

Tissue {
    tag : list
}

Ventricle {
    tag : int
    cell_model : string
    g_kr : float
    g_ks_factor : float
}

Atrium {
    tag : int
    cell_model : string
    conductivity
}

Muscle {
    tag : int
    conductivity : float
}

Scar {
    g_all : float
    g_extracellular : float
}

Scar_1 {
    tag: int
}

Scar_2 {                    // Define new areas of scar?
    rho : float, float
    phi : float, float
    z : float, float
}

Stimulus {
    tag_id : int            // Want to define stimulus either by tagged domain, or by UVC or UAC
    location : string       // 'ventricle' | 'atrium'
    rho : float, float
    phi : float, float
    z : float, float
    current : float
    duration : float
    start : list of float
}