From 4445c16776cd6b93af3be29e43799c07f4a755da Mon Sep 17 00:00:00 2001 From: Benjamin Linard <22132778+blinard-BIOINFO@users.noreply.github.com> Date: Wed, 17 Jul 2024 11:47:48 +0200 Subject: [PATCH] Update README.md --- README.md | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/README.md b/README.md index 2d6d5ff..2fccdf9 100644 --- a/README.md +++ b/README.md @@ -12,6 +12,18 @@ For more information about phylo-k-mers, see our papers: [one](https://academic. If you want to experiment with phylo-k-mers and write some code, check out our [examples](https://github.com/phylo42/I2L/tree/master/examples) to see how to use the code of IPK. +## Rapid installation via Bioconda +It is advised to install the package in a new environment, because our C++ dependencies are strict and may clash with other packages requiring, for instance, libboost. +We also recommend to use `mamba, which is more faster in solving environment dependencies. +``` +conda create -n my_env +conda activate my_env +conda config --set channel_priority strict +mamba install ipk +``` + +## References + --- [1] Romashchenko, Nikolai et al. EPIK: precise and scalable evolutionary placement with informative k-mers. Bioinformatics, 39.12 (2023), btad692.