From ebe157310c3c5c9053c1414fc2c4d0410caace96 Mon Sep 17 00:00:00 2001
From: Nikolai Romashchenko <nikolay.romashchenko@gmail.com>
Date: Wed, 17 Apr 2024 17:24:05 +0200
Subject: [PATCH] [CI] added --on-disk

---
 tests/test-db-build.sh | 27 +++++++++++++++++++--------
 1 file changed, 19 insertions(+), 8 deletions(-)

diff --git a/tests/test-db-build.sh b/tests/test-db-build.sh
index 103eb24..8e85538 100755
--- a/tests/test-db-build.sh
+++ b/tests/test-db-build.sh
@@ -53,29 +53,40 @@ else
     REFERENCE="${SCRIPT_DIR}"/data/D652/reference.fasta
     TREE="${SCRIPT_DIR}"/data/D652/tree.rooted.newick
     DATABASE_REFERENCE="${SCRIPT_DIR}"/data/D652/DB_k7_o2.0.ipk
-    DATABASE_BUILD="${WORKING_DIR}"/DB_k7_o2.0.ipk
+    DATABASE_RAM="${WORKING_DIR}"/DB_ram.ipk
 
-    rm -f "${DATABASE_BUILD}"
-    command=python3 "${IPK_SCRIPT}" build -r "${REFERENCE}" -t "${TREE}" -m GTR -k 7 --omega 2.0 -b "${RAXML_NG}" -w "${WORKING_DIR}" -o "${DATABASE_BUILD}"
+    rm -f "${DATABASE_RAM}"
+    command=python3 "${IPK_SCRIPT}" build -r "${REFERENCE}" -t "${TREE}" -m GTR -k 7 --omega 2.0 -b "${RAXML_NG}" -w "${WORKING_DIR}" -o "${DATABASE_RAM}"
 
     echo "Binary files: OK. Running IPK as: ${command}"
     eval "${command}" 
 
-    if [ ! -f "${DATABASE_BUILD}" ]
+    if [ ! -f "${DATABASE_RAM}" ]
     then
-        echo "Error: could not find ${DATABASE_BUILD}. Something went wrong"
+        echo "Error: could not find ${DATABASE_RAM}. Something went wrong"
         exit 5
     fi
 
-    $IPK_DIFF_BIN 0 "${DATABASE_REFERENCE}" "${DATABASE_BUILD}"
+    $IPK_DIFF_BIN 0 "${DATABASE_REFERENCE}" "${DATABASE_RAM}"
 
     if [ $? -ne 0 ]; then
         echo "Error: databases are different. See the ipkdiff log"
         exit 6
-    else
-        echo "OK! Databases are the same."
     fi
 
+    rm -f "${DATABASE_DISK}"
+    DATABASE_DISK="${WORKING_DIR}"/DB_disk.ipk
+    command=python3 "${IPK_SCRIPT}" build -r "${REFERENCE}" -t "${TREE}" -m GTR -k 7 --omega 2.0 -b "${RAXML_NG}" -w "${WORKING_DIR}" -o "${DATABASE_DISK} --on-disk"
+
+    echo "Running IPK as: ${command}"
+    eval "${command}"
+
+    $IPK_DIFF_BIN 0 "${DATABASE_RAM}" "${DATABASE_DISK}"
+
+    if [ $? -ne 0 ]; then
+        echo "Error: databases are different. See the ipkdiff log"
+        exit 6
+    fi
 
     # D140
     D140_REFERENCE="${SCRIPT_DIR}"/data/D140/reference.fasta