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Updated WebProtégé 4.0.0 Installation (markdown)
Updated WebProtégé 3.0.0 Installation (markdown)
Fix mail.properties link
Added proper link to the WebProtege Command Line tool
Changed WebProtege to WebProtégé
Changed text for settings
Fixed windows paths
Link to mail.properties
Added clarifying notes.
Modified instructions for user facing URL
Text tidy
Added explanatory text about the WebProtege URL
Made important text bold
Tidied bootstrap instructions
Replaced "setup tool" with "command line tool"
removed .md from table of content links
Changed bootstrap instructions
Added contents