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I have no idea what is going on. I use data in Jan to fill the missing data in 27th Jan My data: result.csv
My code:
library(tidyverse) library(sf) library(sp) library(raster) library(gstat) library(automap) library(lattice) library(patchwork) library(viridis) library(spacetime) library(ggplot2) library(dplyr) library(gstat) library(tidyr) data_tidy.subset <- read.csv("result.csv") coordinates(data_tidy.subset) <- ~lat.zone + lon.zone sp = unique(data_tidy.subset@coords) sp = SpatialPoints(sp) time = as.Date("2003-12-31")+c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,20,21,22,23,25,27,29,30,31) data = as.data.frame(cbind(data_tidy.subset@coords,rep(2004,21600),rep(1,21600),data_tidy.subset@data$time.period,data_tidy.subset@data[["SST.zone.period"]])) colnames(data) <- c("lon","lat","year","month","time.period","SST.zone.period") data.STFDF <- STFDF(sp,time,data) data_tidy.subset = na.omit(data_tidy.subset) data_tidy.subset.vgm <- variogram(object = SST.zone.period ~ 1 + lon + lat, data = data.STFDF, width = 0.25, cutoff = 2) plot(data_tidy.subset.vgm,wireframe=T) sepVgm <- vgmST(stModel = "separable", space = vgm(10, "Exp", 5, nugget = 0), time = vgm(10, "Gau", 50, nugget = 0), sill = 20) sepVgm <- fit.StVariogram(data_tidy.subset.vgm, sepVgm) metricVgm <- vgmST(stModel = "metric", joint = vgm(100, "Exp", 100, nugget = 0), sill = 10, stAni = 0.4) metricVgm <- fit.StVariogram(data_tidy.subset.vgm, metricVgm) prodSumVgm <- vgmST("productSum", space = vgm(10, "Exp", 5, nugget = 0), time = vgm(10, "Gau", 50, nugget = 0),k = 11) prodSumVgm <- fit.StVariogram(data_tidy.subset.vgm, prodSumVgm) sumMetricVgm <- vgmST("sumMetric", space = vgm(10, "Exp", 5, nugget = 0), time = vgm(10, "Gau", 50, nugget = 0), joint = vgm(100, "Exp", 100, nugget = 0), stAni=0.4) sumMetricVgm <- fit.StVariogram(data_tidy.subset.vgm, sumMetricVgm) attr(sepVgm, "optim")$value attr(metricVgm, "optim")$value attr(prodSumVgm, "optim")$value attr(sumMetricVgm, "optim")$value plot(data_tidy.subset.vgm, list(sepVgm,metricVgm,prodSumVgm,sumMetricVgm), main = "Semi-variance",all=T,wireframe=T) ###prediction st kriging spat_pred_grid <- expand.grid(lon=seq(20.125, 29.875, 0.25), lat=seq(-44.875,-40.125, 0.25))%>% SpatialPoints(proj4string = CRS(proj4string(data.STFDF))) gridded(spat_pred_grid) <- TRUE temp_pred_grid <- as.Date("2003-12-31") + c(26,27) DE_pred <- STF(sp = spat_pred_grid, # spatial part time = temp_pred_grid) # temporal part data.STIDF <- as(data.STFDF, "STIDF") # convert to STIDF data.STIDF <- subset(data.STIDF, !is.na(data.STIDF$SST.zone.period)) pred_kriged1 <- krigeST(formula = SST.zone.period ~ 1 + lon + lat, data = data.STIDF, newdata = DE_pred, modelList = sumMetricVgm, computeVar = TRUE) View(pred_kriged1) stplot(pred_kriged1)
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I have no idea what is going on. I use data in Jan to fill the missing data in 27th Jan
My data:
result.csv
My code:
The text was updated successfully, but these errors were encountered: