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Schema

LinkML semantic schemas for Regen Network framework.

Requirements

Install LinkML to use the helper and generator commands for interacting with LinkML schemas and data.

Structure

  • LinkML schemas are created in schema/src.
  • Create separate schema files for each logical schema class and import into the root schemas.yaml file.
  • Generated markdown from schemas:
    gen-doc schema/src/schemas.yaml --directory schema/generated --diagram-type er_diagram
    make gen-doc
  • Generate linkml enums for taxonomy terms:
    make gen-taxonomy