From 306e4818670233dc8fd333de97ef67036525ba94 Mon Sep 17 00:00:00 2001
From: rhysnewell <rhys.newell@uqconnect.edu.au>
Date: Thu, 25 Jun 2020 16:06:20 +1000
Subject: [PATCH] removing par_iter on process_bam

---
 src/estimation/contig.rs | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/estimation/contig.rs b/src/estimation/contig.rs
index 51a28768..b8c03ba9 100644
--- a/src/estimation/contig.rs
+++ b/src/estimation/contig.rs
@@ -222,7 +222,7 @@ pub fn pileup_variants<R: NamedBamReader + Send,
     // Process Short Read BAMs
     if bam_readers.len() > 0 {
         info!("Performing guided variant calling...");
-        bam_readers.into_par_iter().enumerate().for_each(|(sample_idx, bam_generator)| {
+        bam_readers.into_iter().enumerate().for_each(|(sample_idx, bam_generator)| {
             process_bam(bam_generator,
                         sample_idx,
                         sample_count,
@@ -253,7 +253,7 @@ pub fn pileup_variants<R: NamedBamReader + Send,
     }
     if longreads.len() > 0 {
         long_threads = std::cmp::max(n_threads / longreads.len(), 1);
-        longreads.into_par_iter().enumerate().for_each(|(sample_idx, bam_generator)| {
+        longreads.into_iter().enumerate().for_each(|(sample_idx, bam_generator)| {
             process_bam(bam_generator,
                         sample_idx,
                         sample_count,