-
Notifications
You must be signed in to change notification settings - Fork 6
/
Copy pathpaper.bib
258 lines (219 loc) · 7.3 KB
/
paper.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
@article{ropensci,
author = {Boettiger, Carl and Chamberlain, Scott and Hart, Edmund and Ram, Karthik},
doi = {10.5334/jors.bu},
issn = {2049-9647},
journal = {Journal of Open Research Software},
keywords = {R,data science,open science,ropensci},
number = {1},
title = {{Building Software, Building Community: Lessons from the rOpenSci Project}},
url = {http://openresearchsoftware.metajnl.com/articles/10.5334/jors.bu/},
volume = {3},
year = {2015}
}
@article{Jones2006,
author = {Jones, Matthew B and Schildhauer, Mark P. and Reichman, O.J. and Bowers, Shawn},
doi = {10.1146/annurev.ecolsys.37.091305.110031},
issn = {1543-592X},
journal = {Annual Review of Ecology, Evolution, and Systematics},
month = {dec},
number = {1},
pages = {519--544},
title = {{The New Bioinformatics: Integrating Ecological Data from the Gene to the Biosphere}},
url = {http://arjournals.annualreviews.org/doi/abs/10.1146/annurev.ecolsys.37.091305.110031},
volume = {37},
year = {2006}
}
@misc{NEON,
author = {Battelle},
booktitle = {Boulder, CO, USA},
title = {{National Ecological Observatory Network.}},
url = {http://data.neonscience.org/},
year = {2016}
}
@article{White2013,
author = {White, Ethan P and Baldridge, Elita and Brym, Zachary and Locey, Kenneth and McGlinn, Daniel and Supp, Sarah},
doi = {10.4033/iee.2013.6b.6.f},
issn = {19183178},
journal = {Ideas in Ecology and Evolution},
keywords = {data,data reuse,data sharing,data structure},
number = {2},
pages = {1--10},
title = {{Nine simple ways to make it easier to (re)use your data}},
url = {http://library.queensu.ca/ojs/index.php/IEE/article/view/4608},
volume = {6},
year = {2013}
}
@techreport{LTER_EML,
author = {LTER},
mendeley-groups = {Future of Science},
title = {{EML Best Practices for LTER Sites}},
url = {https://im.lternet.edu/node/910},
year = {2011}
}
@article{metacat,
author = {Jones, Matthew B and Berkley, Chad},
doi = {10.1109/4236.957896},
journal = {Internet Computing, {\ldots}},
number = {October},
pages = {59--68},
title = {{Managing scientific metadata}},
url = {http://dx.doi.org/10.1109/4236.957896},
year = {2001}
}
@article{Hernandez2012,
author = {Hernandez, Rebecca R and Mayernik, Matthew S and Murphy-mariscal, Michelle L and Allen, Michael F},
doi = {10.1525/bio.2012.62.12.8},
issn = {00063568},
journal = {BioScience},
month = {dec},
number = {12},
pages = {1067--1076},
title = {{Advanced Technologies and Data Management Practices in Environmental Science: Lessons from Academia}},
url = {http://www.jstor.org/stable/info/10.1525/bio.2012.62.12.8},
volume = {62},
year = {2012}
}
@article{Michener1997,
author = {Michener, William K. and Brunt, JW and Helly, John J and Kirchner, Thomas B and Stafford, Susan G},
doi = {10.1890/1051-0761%281997%29007%5B0330%3ANMFTES%5D2.0.CO%3B2},
journal = {Ecological {\ldots}},
title = {{Nongeospatial metadata for the ecological sciences}},
url = {http://www.esajournals.org/doi/abs/10.1890/1051-0761(1997)007{\%}5B0330:NMFTES{\%}5D2.0.CO{\%}3B2},
year = {1997}
}
@article{Overpeck2011,
author = {Overpeck, Jonathan T and Meehl, G. A. and Bony, S. and Easterling, D. R.},
doi = {10.1126/science.1197869},
issn = {0036-8075},
journal = {Science (New York, N.Y.)},
mendeley-groups = {Future of Science},
month = {feb},
number = {6018},
pages = {700--702},
title = {{Climate Data Challenges in the 21st Century}},
url = {http://www.sciencemag.org/cgi/doi/10.1126/science.1197869},
volume = {331},
year = {2011}
}
@article{Peters2010,
author = {Peters, Debra P C},
doi = {10.1016/j.tree.2010.07.005},
issn = {0169-5347},
journal = {Trends in ecology {\&} evolution},
month = {aug},
pages = {1--10},
pmid = {20728958},
publisher = {Elsevier Ltd},
title = {{Accessible ecology: synthesis of the long, deep, and broad.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/20728958},
year = {2010}
}
@article{Hampton2013,
author = {Hampton, Stephanie E and Strasser, Carly a and Tewksbury, Joshua J and Gram, Wendy K and Budden, Amber E and Batcheller, Archer L and Duke, Clifford S and Porter, John H},
doi = {10.1890/120103},
issn = {1540-9295},
journal = {Frontiers in Ecology and the Environment},
keywords = {source:twitter},
month = {mar},
pages = {130312142848005},
title = {{Big data and the future of ecology}},
url = {http://www.esajournals.org/doi/abs/10.1890/120103},
year = {2013}
}
@article{Hopkin2006,
author = {Hopkin, Michael},
doi = {10.1038/444420a},
issn = {1476-4687},
journal = {Nature},
keywords = {Ecosystem,Environmental Monitoring,Environmental Monitoring: economics,United States},
month = {nov},
number = {7118},
pages = {420--1},
pmid = {17122828},
title = {{Ecology: spying on nature.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/17122828},
volume = {444},
year = {2006}
}
@article{Keller2008,
author = {Keller, Michael and Schimel, David S and Hargrove, William W and Hoffman, Forrest M},
doi = {10.1890/1540-9295(2008)6[282:ACSFTN]2.0.CO;2},
issn = {1540-9295},
journal = {Frontiers in Ecology and the Environment},
month = {jun},
number = {5},
pages = {282--284},
title = {{A continental strategy for the National Ecological Observatory Network}},
url = {http://www.esajournals.org/doi/abs/10.1890/1540-9295(2008)6[282:ACSFTN]2.0.CO;2},
volume = {6},
year = {2008}
}
@article{Michener2012,
author = {Michener, William K. and Jones, Matthew B},
doi = {10.1016/j.tree.2011.11.016},
issn = {01695347},
journal = {Trends in Ecology {\&} Evolution},
keywords = {open science},
mendeley-groups = {Theoretical Ecology,Theoretical Ecology/Ecoinformatics,Future of Science},
mendeley-tags = {open science},
month = {jan},
number = {2},
pages = {85--93},
publisher = {Elsevier Ltd},
title = {{Ecoinformatics: supporting ecology as a data-intensive science}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0169534711003399},
volume = {27},
year = {2012}
}
@article{Leinfelder2010,
author = {Leinfelder, Ben and Tao, Jing and Costa, Duane and Jones, Matthew B and Servilla, Mark and O'Brien, Margaret and Burt, Chad},
doi = {10.1016/j.ecoinf.2009.08.006},
issn = {15749541},
journal = {Ecological Informatics},
month = {jan},
number = {1},
pages = {3--8},
publisher = {Elsevier B.V.},
title = {{A metadata-driven approach to loading and querying heterogeneous scientific data}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1574954109000685},
volume = {5},
year = {2010}
}
@MISC{jsonld-w3c,
url = {https://www.w3.org/TR/json-ld/},
author = {Manu Sporny and Dave Longley and Gregg Kellogg and Markus Lanthaler and Niklas Lindström},
canonicaluri = {\url{https://www.w3.org/TR/json-ld/}},
title = {{JSON-LD 1.0: A JSON-based Serialization for Linked Data}},
YEAR = {2017}
}
@MISC{rdf-w3c,
url = {https://www.w3.org/TR/rdf11-primer/},
author = {Guss Schreiber and Yves Raimond},
title = {{RDF 1.1 Primer}},
YEAR = {2014},
}
@MISC{sparql-w3c,
url = {https://www.w3.org/TR/rdf-sparql-query/},
author = {Eric Prud'hommeaux and Andy Seaborne},
title = {{SPARQL Query Language for RDF}},
YEAR = {2008},
}
@MISC{sparql,
url = {https://en.wikipedia.org/wiki/SPARQL},
author = {Wikipedia},
title = {SPARQL},
YEAR = {2017},
}
@MISC{rdf,
url = {https://en.wikipedia.org/wiki/Resource_Description_Framework},
author = {Wikipedia},
title = {{Resource Description Framework}},
YEAR = {2017},
}
@Manual{jsonld,
title = {{jsonld: JSON for Linking Data}},
author = {Jeroen Ooms},
year = {2017},
note = {R package version 1.2},
url = {https://CRAN.R-project.org/package=jsonld},
}