Spoa v3.0.2

Bug fix for Graph::clear function and new build option for Bioconda.

Package spoa-v3.0.2.tar.gz contains complete source code, including submodules.

Spoa v3.0.1

Bug fix in bioparser.

Package spoa-v3.0.1.tar.gz contains complete source code, including submodules.

Spoa v3.0.0

Implemented convex gaps (piecewise affine).

Package spoa-v3.0.0.tar.gz contains complete source code, including submodules.

Spoa v2.0.1

Reinstated affine gaps.

Package spoa-v2.0.1.tar.gz contains complete source code, including submodules.

Spoa v1.1.5

Enabled graph plots and compressed input.

Package spoa-v1.1.5.tar.gz contains complete source code, including submodules.

Spoa v1.1.3

Fixed overflow in graph traversal for graphs with large edge repetition rate.

Package spoa-v1.1.3.tar.gz contains complete source code, including submodules.

Spoa v1.1.2

Fixed base summaries.

Package spoa-v1.1.2.tar.gz contains complete source code, including submodules.

Spoa v1.1.1

Added missing include headers.

Package spoa-v1.1.1.tar.gz contains complete source code, including submodules.

Spoa v1.1.0

Added base summary when generating consensus.

Package spoa-v1.1.0.tar.gz contains complete source code, including submodules.

Spoa v1.0.0

Several additions to the original version described in Genome Research paper, which include AVX2 support, prefix max vectorization for row updates, removed Gotoh alignment and decreased number of memory allocations for alignment matrices.

Package spoa-v1.0.0.tar.gz contains complete source code, including submodules.