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[BUG] srp-to-srr giving SRSs as result #213

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arcones opened this issue Feb 21, 2024 · 3 comments
Open

[BUG] srp-to-srr giving SRSs as result #213

arcones opened this issue Feb 21, 2024 · 3 comments
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@arcones
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arcones commented Feb 21, 2024

Describe the bug
Given SRP319378, when I ask pysradb the SRRs it gives me SRSs instead of SRRs

To Reproduce
Steps to reproduce the behavior:
pysradb srp-to-srr SRP481544

Desktop

  • OS: Ubuntu 22.04
  • Python 3.10.2

Additional context
It happens to me as well in the following SRPs: SRP319378, SRP227554, SRP299449, SRP298142.

@arcones arcones added the bug Something isn't working label Feb 21, 2024
@saketkc
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saketkc commented Feb 21, 2024

This looks like a bug, but I am not sure why I cannot reproduce it with other SRPs (SRP481543 for example)

@arcones
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arcones commented Feb 21, 2024

One detail I should have commented before is that I am integrating pysradb in a python project, not using it from terminal. My application uses pysradb 2.2.0 and does:

from pysradb import SRAweb

[...]
srp = 'SRP481544'
raw_pysradb_data_frame = SRAweb().srp_to_srr(srp)
srrs = list(raw_pysradb_data_frame['run_accession'])

@saketkc
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saketkc commented Feb 22, 2024

I think it is specific to this SRP - are there other examples where you have run into the same error?

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