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bcftools norm Segmentation fault (core dumped) #2020

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Rohit-Satyam opened this issue Oct 16, 2023 · 3 comments
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bcftools norm Segmentation fault (core dumped) #2020

Rohit-Satyam opened this issue Oct 16, 2023 · 3 comments

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@Rohit-Satyam
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Rohit-Satyam commented Oct 16, 2023 •
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Hi @pd3
I was trying to split the multiallelic variants using bcftools norm but I keep on getting an error. I got the VCF from here and subset it for region Pf3D7_03_v3:365177-366948 to test it on a small dataset.

bcftools norm --multiallelics -any --old-rec-tag OLD_CLUMPED --atomize -o bcftools.normalized.gatk.vcf Pf3D7_03_v3.pf7.vcf.gz
Segmentation fault (core dumped)
@lindenb
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lindenb commented Oct 16, 2023

@Rohit-Satyam sorry, wrong name, I'm not a dev of bcftools :-)

@Rohit-Satyam
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Sorry updated.

@Rohit-Satyam Rohit-Satyam mentioned this issue Oct 20, 2023
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@pd3 pd3 closed this as completed in a012786 Oct 21, 2023
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pd3 commented Oct 21, 2023

Thank you for the bug report, this is now fixed

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@lindenb @pd3 @Rohit-Satyam