Restore cython tutorial (#1026)

Remove nitpicky mode, fix link check.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: HDembinski

doc/_static/interactive_demo.ipynb

@@ -11,7 +11,23 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "1ef533261cdf44c88ab722730615534d",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "HBox(children=(Output(), VBox(children=(HBox(children=(Button(description='Fit', style=ButtonStyle()), ToggleB…"
+      ]
+     },
+     "execution_count": null,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "import numpy as np\n",
     "from scipy.stats import norm\n",
@@ -36,6 +52,7 @@
   }
  ],
  "metadata": {
+  "keep_output": true,
   "kernelspec": {
    "display_name": "Python 3.8.13 ('venv': venv)",
    "language": "python",
@@ -50,8 +67,8 @@
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "python3",
-   "version": "3.9.13"
+   "pygments_lexer": "ipython3",
+   "version": "3.12.4"
   },
   "vscode": {
    "interpreter": {

doc/bibliography.txt

@@ -1,4 +1,4 @@
-.. _scipy: https://www.scipy.org/
+.. _scipy: https://scipy.org/
 .. _scipy.optimize: https://docs.scipy.org/doc/scipy/tutorial/optimize.html
 .. _numba: https://numba.pydata.org
 .. _numba_stats: https://github.com/HDembinski/numba-stats
@@ -10,7 +10,7 @@
 .. _threeML: https://github.com/threeML/threeML
 .. _Veusz: https://github.com/veusz/veusz
 .. _TensorProb: https://github.com/tensorprob/tensorprob
-.. _Scikit-HEP: http://scikit-hep.org
+.. _Scikit-HEP: https://scikit-hep.org
 .. _probfit: https://github.com/scikit-hep/probfit
 .. _gammapy: https://github.com/gammapy/gammapy
 .. _flavio: https://github.com/flav-io/flavio

doc/conf.py

@@ -83,5 +83,7 @@
     "--InlineBackend.rc=figure.dpi=96",
 ]
 
-linkcheck_timeout = 3
+linkcheck_timeout = 10
 linkcheck_allow_unauthorized = True
+linkcheck_report_timeouts_as_broken = False
+linkcheck_ignore = ["https://doi.org/10.2307%2F2347496"]

doc/notebooks/cython.ipynb

@@ -25,6 +25,7 @@ Important for most users are only the first two entries.
     notebooks/roofit
     notebooks/external_minimizer
     notebooks/generic_least_squares
+    notebooks/cython
 
 RooFit tutorials
 ----------------

doc/tutorials.rst

@@ -85,7 +85,6 @@ def doc(session: nox.Session) -> None:
     # link check
     session.run(
         "sphinx-build",
-        "-n",  # nitpicky mode
         "-T",  # full tracebacks
         "-v",
         "-b=html",
@@ -95,7 +94,7 @@ def doc(session: nox.Session) -> None:
 
 
 @nox.session(python="3.11", reuse_venv=True)
-def linkcheck(session: nox.Session) -> None:
+def links(session: nox.Session) -> None:
     """Check all links in the documentation."""
     session.install("--only-binary=:all:", "-e.[test,doc]")
 

noxfile.py

@@ -106,6 +106,7 @@ pydocstyle.convention = "numpy"
 "test_*.py" = ["B", "D"]
 "*.ipynb" = ["D"]
 "automatic_differentiation.ipynb" = ["F821"]
+"cython.ipynb" = ["F821"]
 ".ci/*.py" = ["D"]
 "bench/*.py" = ["D"]
 "doc/*.py" = ["D"]