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<!DOCTYPE html>
<html dir="ltr" lang="en">
<head>
<meta charset="UTF-8" />
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>Scientific Transparency</title>
<meta name="keywords" content="scitran, scientific, transparency">
<meta name="description" content="Scientific Transparency">
<link rel="stylesheet" href="site.css">
<link href='//fonts.googleapis.com/css?family=Raleway:400,300,700' rel='stylesheet' type='text/css'>
<link rel="stylesheet" href="https://netdna.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<link rel="shortcut icon" href="images/favicon.ico" type="image/x-icon">
<link rel="apple-touch-icon" href="images/apple-touch-icon.png">
<script src="//ajax.googleapis.com/ajax/libs/jquery/2.1.1/jquery.min.js"></script>
<script src="site.js"></script>
</head>
<body>
<div id="main">
<nav><ul>
<li class="p-intro"><a href="#intro">SciTran</a></li>
<li class="p-components"><a href="#components">components</a></li>
<li class="p-team"><a href="#team">team</a></li>
<li class="p-funding"><a href="#funding">funding</a></li>
</ul>
<div>
<a id="forkme_banner" href="https://github.com/scitran" target="_blank">View on GitHub</a>
</div>
</nav>
<div id="intro" class="section p-intro">
<div class="container left">
<h1 class="text-white" id="scientific-transparency">Scientific Transparency</h1>
<p>SciTran is an open-source software project, started at <a href="http://stanford.edu" target="_blank">Stanford University's</a> <a href="https://vistalab.stanford.edu" target="_blank">VISTA Lab</a>, and originally funded by the <a href="http://simonsfoundation.org" target="_blank">Simons Foundation</a>. Designed to enable and foster reproducible research through data management and provenance tracking, the heart of SciTran is a Python-built RESTful API.</p>
<p>The SciTran API delivers efficient and robust organization, archiving, and sharing of scientific data. We have developed an ecosystem system for neuroimaging data, but our goal is to build a system that is flexible enough to accommodate all types of scientific data – from paper-and-pencil tests to genomics.</p>
<p>The SciTran codebase is now being developed and maintained by <a href="https://flywheel.io" target="_blank">Flywheel</a>, a commercial entity, founded by the original SciTran team. Meanwhile, the VISTA Lab group has transitioned its focus from developing SciTran core functionality to creating scientific applications that run within the SciTran framework, with a particular focus on reproducible methods in neuroscience research.</p>
<p>While SciTran is a set of core open-source components, released under the <a href="https://github.com/scitran/core/blob/master/LICENSE" target="_blank">MIT license</a>, and <a href="https://github.com/scitran" target="_blank">hosted on GitHub</a>, it is not a complete system.
<a href="https://flywheel.io" target="_blank">Flywheel</a> has built a comprehensive data management and processing solution, including a modern web-based user interface, powerful search functionality, efficient command line tools and language bindings, as well as a scalable computation framework. Flywheel also offers commercial support for installation and maintenance of their system.</p>
<p><center><a href="https://flywheel.io" target="_blank"><img src="images/flywheel.png" width="150"/></a></center></p>
<p>The SciTran API has also been adopted by the <a href="http://reproducibility.stanford.edu" target="_blank">Stanford Center for Reproducible Neuroscience</a>, led by Russ Poldrack and Chris Gorgolewski. The Center has supported members of the SciTran team for collaborating on the <a href="https://openfmri.org" target="_blank">OpenfMRI</a> platform.</p>
</div>
</div>
<div id="components" class="section p-components">
<div class="subtlecircle sectiondivider faicon">
<span class="fa-stack">
<i class="fa fa-circle fa-stack-2x"></i>
<i class="fa fa-cogs fa-stack-1x"></i>
</span>
<h5 class="icon-title">components</h5>
</div>
<div class="container left">
<h1 id="components">Components</h1>
<table>
<tr>
<td vertical-align="middle">
<a href="https://github.com/scitran/core" target="_blank"><strongg>Core</strongg></a> RESTful HTTP API, written in Python and backed by MongoDB
</td>
</tr>
<tr>
<td vertical-align="middle">
<a href="https://github.com/scitran/reaper" target="_blank"><strongg>Reaper</strongg></a> Instrument integration, mainly focused on DICOM
</td>
</tr>
<tr>
<td vertical-align="middle">
<a href="https://github.com/scitran-apps" target="_blank"><strongg>Apps</strongg></a> Reproducible scientific applications
</td>
</tr>
</table>
</div>
</div>
<div id="team" class="section p-team">
<div class="subtlecircle sectiondivider faicon">
<span class="fa-stack">
<i class="fa fa-circle fa-stack-2x"></i>
<i class="fa fa-users fa-stack-1x"></i>
</span>
<h5 class="icon-title">team</h5>
</div>
<div class="container ">
<h1 id="team">Original Team</h1>
<table style="text-align:center">
<tr>
<td width="25%">
<a href="//github.com/wandell">
<img class="round" src="images/team/wandell.jpg" width="125" style="margin: 15px" /><br />
<stronger>Brian Wandell</stronger><br />
</a>
<jobtitle>Project Lead</jobtitle>
</td>
<td width="25%">
<a href="//github.com/gsfr">
<img class="round" src="images/team/schaefer.png" width="125" style="margin: 15px" /><br />
<stronger>Gunnar Schaefer</stronger><br />
</a>
<jobtitle>Engineering Lead</jobtitle>
</td>
<td width="25%">
<a href="//github.com/lmperry">
<img class="round" src="images/team/perry.png" width="125" style="margin: 15px" /><br />
<stronger>Michael Perry</stronger><br />
</a>
<jobtitle>Software Engineer</jobtitle>
</td>
<td width="25%">
<a href="//github.com/rentzso">
<img class="round" src="images/team/frigato.jpg" width="125" style="margin: 15px" /><br />
<stronger>Renzo Frigato</stronger><br />
</a>
<jobtitle>Software Engineer</jobtitle>
</td>
</tr>
</table>
</div>
</div>
<div id="funding" class="section p-funding">
<div class="subtlecircle sectiondivider faicon">
<span class="fa-stack">
<i class="fa fa-circle fa-stack-2x"></i>
<i class="fa fa-usd fa-stack-1x"></i>
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<h5 class="icon-title">funding</h5>
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<div class="container ">
<h1 id="funding-sources">Funding Sources</h1>
<table text-align="center">
<tr>
<td><a href="http://stanford.edu" target="_blank"><img class="bodyimage" src="images/funding/stanford.png" width="300" /></a></td>
<td><a href="http://simonsfoundation.org" target="_blank"><img class="bodyimage" src="images/funding/simons.png" width="300" /></a></td>
<td><a href="http://arnoldfoundation.org" target="_blank"><img class="bodyimage" src="images/funding/arnold.png" width="300" /></a></td>
</tr>
</table>
<table text-align="center">
<tr>
<td><a href="http://nih.gov" target="_blank"><img class="bodyimage" src="images/funding/nih.png" width="300" /></a></td>
<td><a href="http://nsf.gov" target="_blank"><img class="bodyimage" src="images/funding/nsf.png" width="300" /></a></td>
</tr>
</table>
</div>
</div>
<div id="footer" class="section text-white">
<div class="container">
<table id="footertable">
<tr>
<td width="33%"><a href="#intro" style="text-decoration:none"><h5>↥</h5></a></td>
</tr>
</table>
</div>
</div>
</div>
</body>
</html>